targetscan.Mm.egMIRNA {targetscan.Mm.eg.db}R Documentation

Annotation of miRBase identifiers to associated data

Description

This data set gives mappings between miRBase identifiers and their respective associated data.

Details

This is an R object containing key and value pairs. Keys are miRBase identifiers and values are their associated data. Values are simple named lists of the following members:

MiRBase.ID
The miRBase identifier, it starts with a three letter species code.
MiRBase.Accession
Accession number of the miRNA.
Seed.m8
miRNA seed, seven bases from the 5' end og the miRNA.
Species
Scientific name of the species.
Mature.sequence
Mature sequence of the miRNA.
Family.conservation
Level of conservation of the miRNA family.

The package contains the data for all miRBase identifiers, the ones for other species as well.

References

http://www.targetscan.org for TargetScan and http://microrna.sanger.ac.uk/sequences/ for miRBase.

Examples

## Query some random miRBase identifiers
fams <- sample(ls(targetscan.Mm.egMIRNA), 3)
mget(fams, targetscan.Mm.egMIRNA)

[Package targetscan.Mm.eg.db version 5.0-1 Index]