Research staff

A | B | C | D | E | G | K | L | M | O | P | Q | R | S | T | Z

A

©Marie-France Arnold

Baroj Abdulkarim
Postdoctoral position, Group Marques

B

	Nicola Bedoni Graduate Assistant, Group Rivolta Research project: Study of Inherited Retinal Degenerations using whole genome sequencing and autozygome-based analysis Keywords: Next generation sequencing, bioinformatics, molecular biology, inheritance, human genetics Personal link: Linkedin

	Adriano Biasini Doctoral Student SNSF, Group Marques

	Tugce Bilgin Sonay Research Associate, Group Dessimoz Research project: Evolution of gene regulation through long non-coding RNA Keywords: lincRNA, evolution, gene expression, cis-regulation, positive selection Personal link: tugcebilgin.net

	Anneke Brümmer Postdoctoral position, Group Bergmann Research project: Analysing properties of lincRNAs and mRNAs to understand why lincRNAs are not translated Keywords: computational RNA biology, lincRNAs, translation, codon usage, tRNA abundance

C

	Sarvenaz Choobdar Postdoctoral position, Group Bergmann

	Katarina Cisarova Graduate Assistant, Group Rivolta

	Florian Clemente Postdoctoral position, Group Malaspinas

	Diana Cruz Davalos Doctoral Student SNSF, Group Malaspinas

D


	Jyoti Dalal Doctoral Student, Group Malaspinas

	Leonardo De Oliveira Martins Postdoctoral Researcher SNSF, Group Dessimoz Research project: Clustering and visualisation models for comparing gene families Keywords: Phylogenomics, species trees, clustering, genomics, visualisation Personal link: www.leomartins.org

	Pablo Duchén Bocángel Postdoctoral position, Group Salamin

	David Dylus Postdoctoral position, Group Dessimoz Research projects: - Fast phylogenomic data generation from reads by sidestepping assembly, annotation and orthology prediction - Tree visualisation and side by side tree comparison using phylo.io - Benchmarking of NGS pipelinesfor outbreak detection within hospitals in Switzerland Keywords: Phylogenomics, benchmarking, visualisation, evolution, orthology Personal links: - Linkedin - https://github.com/dvdylus

E

Ikram El Zaoui
Postdoctoral position, Group Rivolta

G

	Théo Gaboriau Postdoctoral position, Group Salamin

	Arnaud Gaigher Postdoctoral position, Group Salamin

	Alberto Garcia Jimenez Doctoral Student, Group Salamin

	Natasha Glover Postdoctoral position, Group Dessimoz

	Kimberly Julie Gilbert Postdoctoral position, Group Dessimoz


H

	Sara Heim Doctoral Student, Group Salamin

	Robin Hofmeister Doctoral Student, Group Delaneau


I
	Arvind Iyer Doctoral Student, Group Ciriello

K

	Bita Khalili Postdoctoral position, Group Bergmann

	Athanasios Kousathanas Postdoctoral position, Group Robinson

	Daniel Krefl Postdoctoral position, Group Bergmann

L

Yuanlong Liu
Postdoctoral position, Group Ciriello

Research project: Using computational approaches to understand the structural variations in the 3D genome and their impact on cancer

Keywords: Cancer genomics, 3D genome, Hi-C data analysis, computational oncology

Oriane Loiseau
Graduate Assistant, Group Salamin

M

	Anna Marcionetti Doctoral Student SNSF, Group Salamin

	Tarcisio Mendes De Farias Postdoctoral position, Group Dessimoz Research project: BioSODA: An intuitive search function for bioinformatics databases Keywords: Natural language processing, semantic web, data integration, biological ontolgies, heterogeneous databases Personal link: Linkedin

	Frédéric Michaud Postdoctoral position, Group Malaspinas

	Marco Mina Postdoctoral position, Group Ciriello

	David Moi Research Associate, Group Dessimoz

	Barbara Mota Doctoral Student, Group Malaspinas & Delaneau

N

	Yannis Nevers Doctoral Student, Group Dessimoz

O

Sven Erik Ojavee
Graduate Assistant, Group Robinson

P

Marion Patxot Bertran
Doctoral Student SNSF, Group Robinson

Virginie Peter
Doctoral Student, Group Rivolta

Research project: Genomics of retinal degenerations and the clinical and molecular characterization of a cohort of patients in Portugal with inherited retinal degeneration

Keywords: Inherited Retinal Degenerations, NGS, mendelian, bioinformatics, functional studies

Q

Mathieu Quinodoz
Graduate Assistant, Group Rivolta

Research project: Using computer-based OMICS such as whole exome or genome sequencing, RNA-Seq, ChIP-Seq or long-reads sequencing to analyze human Mendelian disorders

Keywords: Sequencing, disease, machine-learning, retinal degeneration, molecular biology

R

	Rocio Rama Ballesteros Doctoral Student SNSF, Group Salamin

	Franck Raynaud Postdoctoral position, Group Ciriello

	Diogo M. Ribeiro Postdoctoral position, Group Delaneau

	Victor Rossier Doctoral Student SNSF, Group Dessimoz (co-supervised by Marc Robinson-Rechavi, DEE)

S

Sarah Schmid
Graduate Assistant, Group Salamin

Research project: Genomics of adaptive radiation in clownfish

Keywords: Hybridization, mutualism, transcriptomics, speciation, phylogeny

Reyhan Sönmez Flitman
Doctoral Student, Group Bergmann

T

	Yihong Jennifer Tan Postdoctoral position, Group Marques Research project: An unexpected contribution of lincRNA splicing to enhancer-associated gene regulation in cis Keywords: Enhancer, intergenic lon noncoding RNA, splicing, transcription, cis gene regulation

	Daniele Tavernari Doctoral Student SNSF, Group Ciriello Research project: Genomic and epigenetic heterogeneity of lung adenocarcinoma Keywords: Genomics, epigenetics, cancer, computational biology, tumor heterogeneity Personal link: Linkedin

	Mattia Tomasoni Graduate Assistant, Group Bergmann

	Clément Train Doctoral Student SNSF, Group Dessimoz Research project: Inferring hierarchical orthologous groups Keywords: Phylogenetic, evolution, orthology, visualisation, clustering Personal link: Linkedin

	Daniel Trejo Baños Postdoctoral position, Group Robinson

Z

Marie Zufferey
Doctoral Student, Group Ciriello

Research project: Topologically associating domains: detection, function and role in cancer

Keywords: Hi-C, TAD, chromatin organization, tridimensional genome, cancer