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Publications

Publications


In press |  2012 |  2011 |  2010 |  2009 |  2008 |  2007 |  2006 |  2005 |  2004 |  2003 |  2002 | 
 

In Press
Pellissier L., Ndiribe C., Dubuis A., Pradervand JN., Salamin N., Guisan A., Rasmann S., In Press. Turnover of plant lineages shapes herbivore phylogenetic beta diversity along ecological gradients. Ecology Letters .
2012
Aliscioni S., Bell H. L., Besnard G., Christin P.-A., Columbus J. T., Duvall M. R., Edwards E. J., Giussani L., Hasenstab-Lehman K., Hilu K. W., Hodkinson T. R., Ingram A. L., Kellogg E. A., Mashayekhi S., Morrone O., Osborne C. P., Salamin N., Schaefer H., Spriggs E., Smith S. A., Zuloaga F., Grass Phylogeny Working Group II, 2012. New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins. New Phytologist 193(2) pp. 304-312. [DOI] [Web of Science] [Pubmed]
Christin P.A., Besnard G., Edwards E.J., Salamin N., 2012. Effect of genetic convergence on phylogenetic inference. Molecular Phylogenetics and Evolution 62(3) pp. 921-927. [DOI] [Web of Science] [Pubmed]
Cook B.I., Wolkovich E.M., Davies T.J., Ault T.R., Betancourt J.L., Allen J.M., Bolmgren K., Cleland E.E., Crimmins T.M., Kraft N.J.B., Lancaster L.T., Mazer S.J., McCabe G.J., McGil B.J., Parmesan C., Pau S., Regetz J., Salamin N., Schwartz M.D., Travers S.E., 2012. Sensitivity of Spring Phenology to Warming Across Temporal and Spatial Climate Gradients in Two Independent Databases. Ecosystems 15(8) pp. 1283-1294. [DOI] [Web of Science]
Davies T.J., Kraft N.J., Salamin N., Wolkovich E.M., 2012. Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism. Ecology 93(2) pp. 242-247. [DOI] [Web of Science] [Pubmed]
Litsios G., Pellissier L., Forest F., Lexer C., Pearman P.B., Zimmermann N.E., Salamin N., 2012. Trophic specialization influences the rate of environmental niche evolution in damselfishes (Pomacentridae). Proceedings of the Royal Society of London B Biological Sciences 279(1743) pp. 3662-3669. [DOI] [Web of Science] [Pubmed]
Litsios G., Salamin N., 2012. Effects of phylogenetic signal on ancestral state reconstruction. Systematic Biology 61(3) pp. 533-538. [DOI] [Web of Science] [Pubmed]
Litsios G., Sims C.A., Wüest R.O., Pearman P.B., Zimmermann N.E., Salamin N., 2012. Mutualism with sea anemones triggered the adaptive radiation of clownfishes. BMC Evolutionary Biology 12(1) p. 212. [DOI] [Web of Science] [Pubmed]
Moretti S., Murri R., Maffioletti S., Kuzniar A., Castella B, Salamin N., Robinson-Rechavi M., Stockinger H., 2012. gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. pp. 59-68 in Glatard T, Silverstein J (eds.) HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. Studies in Health Technology and Informatics 175. IOS Press Books online. [Document] [url editor site] [DOI]
Naciri Y., Caetano S., Salamin N., 2012. Plant DNA barcodes and the influence of gene flow. Molecular Ecology Resources 12(4) pp. 575-580. [DOI] [Web of Science] [Pubmed]
Pellissier L., Litsios G., Fiedler K., Pottier J., Dubuis A., Pradervand J.N., Salamin N., Guisan A., 2012. Loss of interactions with ants under cold climate in a regional myrmecophilous butterfly fauna. Journal of Biogeography 39(10) pp. 1782-1790. [DOI] [Web of Science]
Schabauer H., Valle M., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Yang Z., Salamin N., 2012. SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model. pp. 700-708 in Aluru S., Bader D.A. (eds.) HiCOMB (11th IEEE International Workshop on High Performance Computational Biology). IEEE. [Document] [DOI]
Wolkovich E.M., Cook B.I., Allen J.M., Crimmins T.M., Betancourt J.L., Travers S.E., Pau S., Regetz J., Davies T.J., Kraft N.J., Ault T.R., Bolmgren K., Mazer S.J., McCabe G.J., McGill B.J., Parmesan C., Salamin N., Schwartz M.D., Cleland E.E., 2012. Warming experiments underpredict plant phenological responses to climate change. Nature 485(7399) pp. 494-497. [DOI] [Web of Science] [Pubmed]
Yang S.Y., Grønlund M., Jakobsen I., Grotemeyer M.S., Rentsch D., Miyao A., Hirochika H., Kumar C.S., Sundaresan V., Salamin N., Catausan S., Mattes N., Heuer S., Paszkowski U., 2012. Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family. Plant Cell 24(10) pp. 4236-4251. [DOI] [Web of Science] [Pubmed]
2011
Buerki S., Forest F., Salamin N., Alvarez N., 2011. Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study. Systematic Biology 60(1) pp. 32-44. [DOI] [Web of Science] [Pubmed]
Osborne C.P., Visser V., Freckleton R.P., Simpson D., Clayton D., Barker A., Chapman S., Salamin N., Uren V., GrassPortal Dev Team, 2011. GrassPortal: an online ecological and evolutionary data facility for the grasses. pp. 566-566 in Van Staden J. (eds.) South African Journal of Botany. South African Journal of Botany 77(2). Elsevier. [DOI] [Web of Science]
Pio D.V., Broennimann O., Barraclough T.G., Reeves G., Rebelo A.G., Thuiller W., Guisan A., Salamin N., 2011. Spatial predictions of phylogenetic diversity in conservation decision making. Conservation Biology 25(6) pp. 1229-1239. [DOI] [Web of Science] [Pubmed]
2010
Burri R., Salamin N., Studer R.A., Roulin A., Fumagalli L., 2010. Adaptive divergence of ancient gene duplicates in the avian MHC class II beta. Molecular Biology and Evolution 27(10) pp. 2360-2374. [DOI] [Web of Science] [Pubmed]
Edwards E.J., Osborne C.P., Strömberg C.A., Smith S.A., C4 Grasses Consortium, Bond W.J., Bond W.J., Christin P.A., Cousins A.B., Duvall M.R., Fox D.L., Freckleton R.P., Ghannoum O., Hartwell J., Huang Y., Janis C.M., Keeley J.E., Kellogg E.A., Knapp A.K., Leakey A.D., Nelson D.M., Saarela J.M., Sage R.F., Sala O.E., Salamin N., Still C.J., Tipple B., 2010. The origins of C4 grasslands: integrating evolutionary and ecosystem science. Science 328(5978) pp. 587-591. [DOI] [Web of Science] [Pubmed]
Hodkinson T. R., Chonghaile G. N., Sungkaew S., Chase M. W., Salamin N., Stapleton C. M. A., 2010. Phylogenetic analysis of plastid and nuclear DNA sequences reveals a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae). Plant Ecology and Diversity 3(2) pp. 109-120. [DOI] [Web of Science]
Roulin A., Salamin N., 2010. Insularity and the evolution of melanism, sexual dichromatism and body size in the worldwide-distributed barn owl. Journal of Evolutionary Biology 23(5) pp. 925-934. [Document] [DOI] [Pubmed]
Salamin N., Wüest R.O., Lavergne S., Thuiller W., Pearman P.B., 2010. Assessing rapid evolution in a changing environment. Trends in Ecology and Evolution 25(12) pp. 692-698. [DOI] [Web of Science] [Pubmed]
2009
Besnard G., Muasya A.M., Russier F., Roalson E.H., Salamin N., Christin P.A., 2009. Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence. Molecular biology and evolution 26(8) pp. 1909-1919. [DOI] [Web of Science] [Pubmed]
Christin P.A., Petitpierre B., Salamin N., Büchi L., Besnard G., 2009. Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype. Molecular Biology and Evolution 26(2) pp. 357-365. [DOI] [Web of Science] [Pubmed]
Christin P.A., Salamin N., Kellogg E.A., Vicentini A., Besnard G., 2009. Integrating phylogeny into studies of C4 variation in the grasses. Plant Physiology 149(1) pp. 82-87. [Document] [DOI] [Web of Science] [Pubmed]
Christin P.A., Samaritani E., Petitpierre B., Salamin N., Besnard G., 2009. Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics. Genome Biology and Evolution 2009 pp. 221-230. [Document] [url editor site] [DOI] [Web of Science]
Roulin A., Wink M., Salamin N., 2009. Selection on a eumelanic ornament is stronger in the tropics than in temperate zones in the worldwide-distributed barn owl. Journal of Evolutionary Biology 22(2) pp. 345-354. [DOI] [Web of Science] [Pubmed]
Sungkaew S., Stapleton C.M., Salamin N., Hodkinson T.R., 2009. Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s. Journal of Plant Research 122(1) pp. 95-108. [DOI] [Web of Science] [Pubmed]
2008
Bouchenak-Khelladi Y., Salamin N., Savolainen V., Forest F., Bank M., Chase M.W., Hodkinson T.R., 2008. Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Molecular Phylogenetics and Evolution 47(2) pp. 488-505. [DOI] [Web of Science] [Pubmed]
Burri R., Hirzel H.N., Salamin N., Roulin A., Fumagalli L., 2008. Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution. Molecular Biology and Evolution 25(6) pp. 1180-1191. [DOI] [Web of Science] [Pubmed]
Christin P.A., Besnard G., Samaritani E., Duvall M.R., Hodkinson T.R., Savolainen V., Salamin N., 2008. Oligocene CO2 decline promoted C4 photosynthesis in grasses. Current Biology 18(1) pp. 37-43. [DOI] [Web of Science] [Pubmed]
Christin P.A., Salamin N., Muasya A.M., Roalson E.H., Russier F., Besnard G., 2008. Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis. Molecular Biology and Evolution 25(11) pp. 2361-2368. [DOI] [Web of Science] [Pubmed]
Dubey S., Salamin N., Ruedi M., Barrière P., Colyn M., Vogel P., 2008. Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 48(3) pp. 953-963. [Document] [DOI] [Web of Science] [Pubmed]
2007
Christin P.A., Salamin N., Savolainen V., Duvall M.R., Besnard G., 2007. C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes. Current Biology 17(14) pp. 1241-1247. [DOI] [Web of Science] [Pubmed]
Dubey S., Salamin N., Ohdachi S.D., Barrière P., Vogel P., 2007. Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations. Molecular Phylogenetics and Evolution 44(1) pp. 126-137. [Document] [DOI] [Pubmed]
Hodkinson T.R., Savolainen V., Jacobs S.W.L., Bouchenak-Khelladi Y., Kinney M.S., Salamin N., 2007. Supersizing: progress in documenting and understanding grass species richness. pp. 275-298 in Hodkinson T.R., Parnell J.A.N. (eds.) Reconstructing the tree of life: taxonomy and systematics of species rich taxa. The Systematics Association special volume series 72. CRC Press, Boca Raton. [DOI]
Hodkinson T.R., Waldren S., Parnell J.A., Kelleher C.T., Salamin K., Salamin N., 2007. DNA banking for plant breeding, biotechnology and biodiversity evaluation. Journal of Plant Research 120(1) pp. 17-29. [DOI] [Web of Science] [Pubmed]
2006
Basic N., Salamin N., Keller C., Galland N., Besnard G., 2006. Cadmium hyperaccumulation and genetic differentiation of Thlaspi caerulescens populations. Biochemical Systematics and Ecology 34(9) pp. 667-677. [DOI] [Web of Science]
Donnelly A., Salamin N., Jones M. B., 2006. Changes in tree phenology: an indicator of spring warming in Ireland? Biology and Environment: Proceedings of the Irish Royal Academy 106(1) pp. 49-56. [DOI]
Flannery M.L., Mitchell F.J., Coyne S., Kavanagh T.A., Burke J.I., Salamin N., Dowding P., Hodkinson T.R., 2006. Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs. Theoretical and Applied Genetics 113(7) pp. 1221-1231. [DOI] [Web of Science] [Pubmed]
Savolainen V., Anstett M.C., Lexer C., Hutton I., Clarkson J.J., Norup M.V., Powell M.P., Springate D., Salamin N., Baker W.J., 2006. Sympatric speciation in palms on an oceanic island. Nature 441(7090) pp. 210-213. [DOI] [Web of Science] [Pubmed]
Savolainen V., Lexer C., Anstett M. C., Hutton I., Clarkson J. J., Norup M. V., Powell M. P., Springate D., Salamin N., Baker W. J., 10-2006. Evolutionary biology - Sympatric plant speciation in islands? Reply. Nature 443(7114) pp. E12-13. [DOI] [Web of Science]
Strauss S.Y., Webb C.O., Salamin N., 2006. Exotic taxa less related to native species are more invasive. Proceedings of the National Academy of Sciences of the United States of America 103(15) pp. 5841-5845. [DOI] [Web of Science] [Pubmed]
2005
Chase M.W., Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., Haidar N., Savolainen V., 2005. Land plants and DNA barcodes: short-term and long-term goals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360(1462) pp. 1889-1895. [DOI] [Web of Science] [Pubmed]
Rønsted N., Weiblen G.D., Cook J.M., Salamin N., Machado C.A., Savolainen V., 2005. 60 million years of co-divergence in the fig-wasp symbiosis. Proceedings of the Royal Society of London B Biological Sciences 272(1581) pp. 2593-2599. [DOI] [Web of Science] [Pubmed]
Salamin N., Hodkinson T.R., Savolainen Coates V., 2005. Towards building the tree of life: a simulation study for all angiosperm genera. Systematic Biology 54(2) pp. 183-196. [DOI] [Web of Science] [Pubmed]
2004
Salamin N., Davies T. J., 2004. Using supertrees to investigate species richness in grasses and flowering plants. pp. 461-486 in Bininda-Emonds O.R.P. (eds.) Phylogenetic supertrees. Computational Biology 4. Kluwer Academic Publishers, Dordrecht. [Document]
2003
Salamin N., Chase M.W., Hodkinson T.R., Savolainen V., 2003. Assessing internal support with large phylogenetic DNA matrices. Molecular Phylogenetics and Evolution 27(3) pp. 528-539. [DOI] [Web of Science] [Pubmed]
2002
Salamin N., Hodkinson T.R., Savolainen V., 2002. Building supertrees: an empirical assessment using the grass family (Poaceae). Systematic Biology 51(1) pp. 136-150. [DOI] [Web of Science] [Pubmed]
Savolainen V., Chase M.W., Salamin N., Soltis D.E., Soltis P.S., López A.J., Fédrigo O., Naylor G.J., 2002. Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion. Systematic Biology 51(4) pp. 638-647. [DOI] [Web of Science] [Pubmed]

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