Publications
Group Goudet
Publications
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Alcala N., Streit D., Goudet J., Vuilleumier S., 2013. Peak and Persistent Excess of Genetic Diversity Following an Abrupt Migration Increase.
Genetics
193 pp. 953-971. [DOI]
Blaser O, Grossen C, Neuenschwander S, Perrin N, 2013. Sex chromosome turnover induced by deleterious mutation load.
Evolution
67(3) pp. 635-645. [DOI]
Delplancke M., Alvarez N., Benoit L., Espíndola A., I Joly H., Neuenschwander S., Arrigo N., 2013. Evolutionary history of almond tree domestication in the Mediterranean basin.
Molecular Ecology
22(4) pp. 1092-1104. [DOI]
[Web of Science]
[Pubmed]
Dreiss A.N., Antoniazza S., Burri R., Fumagalli L., Sonnay C., Frey C., Goudet J., Roulin A., 2012. Local adaptation and matching habitat choice in female barn owls with respect to melanic coloration.
Journal of Evolutionary Biology
25(1) pp. 103-114. [Document]
[DOI]
[Web of Science]
[Pubmed]
Grossen C., Neuenschwander S., Perrin N., 2012. The balanced lethal system of crested newts: a ghost of sex chromosomes past?
American Naturalist
180(6) pp. E174-E183. [DOI]
[Web of Science]
[Pubmed]
Grossen C., Neuenschwander S., Perrin N., 2012. The evolution of XY recombination: sexually antagonistic selection versus deleterious mutation load.
Evolution
66(10) pp. 3155-3166. [DOI]
[Web of Science]
[Pubmed]
Kronholm I., Picó F.X., Alonso-Blanco C., Goudet J., de Meaux J., 2012. Genetic basis of adaptation in Arabidopsis thaliana: local adaptation at the seed dormancy QTL DOG1.
Evolution
66(7) pp. 2287-2302. [DOI]
[Web of Science]
[Pubmed]
Mafli A., Goudet J., Farmer E.E., 2012. Plants and tortoises: mutations in the Arabidopsis jasmonate pathway increase feeding in a vertebrate herbivore.
Molecular Ecology
21(10) pp. 2534-2541. [DOI]
[Web of Science]
[Pubmed]
van de Waal E., Krützen M., Hula J., Goudet J., Bshary R., 2012. Similarity in food cleaning techniques within matrilines in wild vervet monkeys.
PLoS One
7(4) pp. e35694. [DOI]
[Web of Science]
[Pubmed]
Ascunce M.S., Yang C.C., Oakey J., Calcaterra L., Wu W.J., Shih C.J., Goudet J., Ross K.G., Shoemaker D., 2011. Global invasion history of the fire ant Solenopsis invicta.
Science
331(6020) pp. 1066-1068. [DOI]
[Web of Science]
[Pubmed]
Barluenga M., Austerlitz F., Elzinga J.A., Teixeira S., Goudet J., Bernasconi G., 2011. Fine-scale spatial genetic structure and gene dispersal in Silene latifolia.
Heredity
106(1) pp. 13-24. [DOI]
[Web of Science]
[Pubmed]
Blaser O., Neuenschwander S., Perrin N., 2011. On the maintenance of sex-chromosome polymorphism by sex-antagonistic selection.
American Naturalist
178(4) pp. 515-524. [DOI]
[Web of Science]
[Pubmed]
Grossen C., Neuenschwander S., Perrin N., 2011. Temperature-dependent turnovers in sex-determination mechanisms: a quantitative model.
Evolution
65(1) pp. 64-78. [DOI]
[Web of Science]
[Pubmed]
Meirmans P.G., Goudet J., IntraBioDiv Consortium, Gaggiotti O.E., 2011. Ecology and life history affect different aspects of the population structure of 27 high-alpine plants.
Molecular Ecology
20(15) pp. 3144-3155. [DOI]
[Web of Science]
[Pubmed]
Roulin A., Antoniazza S., Burri R., 2011. Spatial variation in the temporal change of male and female melanic ornamentation in the barn owl.
Journal of Evolutionary Biology
24(7) pp. 1403-1409. [Document]
[DOI]
[Web of Science]
[Pubmed]
Roulin A., Burri R., Antoniazza S., 2011. Owl melanin-based plumage redness is more frequent near than away from the equator: implications on the effect of climate change on biodiversity.
Biological Journal of the Linnean Society
102(3) pp. 573-582. [Document]
[DOI]
[Web of Science]
Antoniazza S., Burri R., Fumagalli L., Goudet J., Roulin A., 2010. Local adaptation maintains clinal variation in melanin-based coloration of European barn owls (Tyto alba).
Evolution
64(7) pp. 1944-1954. [embargo indéterminé]
[DOI]
[Web of Science]
[Pubmed]
Biollaz F., Bruyndonckx N., Beuneux G., Mucedda M., Goudet J., Christe P., 2010. Genetic isolation of insular populations of the Maghrebian bat, Myotis punicus, in the Mediterranean Basin.
Journal of Biogeography
37(8) pp. 1557-1569. [DOI]
[Web of Science]
Bruyndonckx N., Biollaz F., Dubey S., Goudet J., Christe P., 2010. Mites as biological tags of their hosts.
Molecular Ecology
19(13) pp. 2770-2778. [Document]
[DOI]
[Web of Science]
[Pubmed]
Thompson S.L., Lamothe M., Meirmans P.G., Périnet P., Isabel N., 2010. Repeated unidirectional introgression towards Populus balsamifera in contact zones of exotic and native poplars.
Molecular ecology
19(1) pp. 132-145. [DOI]
[Web of Science]
[Pubmed]
Vuilleumier S., Goudet J., Perrin N., 2010. Evolution in heterogeneous populations: from migration models to fixation probabilities.
Theoretical Population Biology
78(4) pp. 250-258. [DOI]
[Web of Science]
[Pubmed]
Wegmann D., Leuenberger C., Neuenschwander S., Excoffier L., 2010. ABCtoolbox: a versatile toolkit for approximate Bayesian computations.
BMC Bioinformatics
11(1) p. 116. [Document]
[DOI]
[Web of Science]
[Pubmed]
Broquet T., Yearsley J., Hirzel A.H., Goudet J., Perrin N., 2009. Inferring recent migration rates from individual genotypes.
Molecular Ecology
18(6) pp. 1048-1060. [Document]
[DOI]
[Web of Science]
[Pubmed]
Escobar J. S., Facon B., Jarne P., Goudet J., David P., 2009. Correlated evolution of mating strategy and inbreeding depression within and among populations of the hermaphroditic snail Physa acuta.
Evolution
63(11) pp. 2790-2804. [embargo indéterminé]
[DOI]
[Web of Science]
Evanno G., Castella E., Antoine C., Paillat G., Goudet J., 2009. Parallel changes in genetic diversity and species diversity following a natural disturbance.
Molecular Ecology
18(6) pp. 1137-1144. [Document]
[DOI]
[Web of Science]
[Pubmed]
Henry P., Le Lay G., Goudet J., Guisan A., Jahodová S., Besnard G., 2009. Reduced genetic diversity, increased isolation and multiple introductions of invasive giant hogweed in the western Swiss Alps.
Molecular Ecology
18(13) pp. 2819-2831. [embargo indéterminé]
[DOI]
[Web of Science]
[Pubmed]
Meirmans P.G., Bousquet J., Isabel N., 2009. A metapopulation model for the introgression from genetically modified plants into their wild relatives.
Evolutionary Applications
2(2) pp. 160-171. [DOI]
[Web of Science]
Romero I.G., Manica A., Goudet J., Handley L.L., Balloux F., 2009. How accurate is the current picture of human genetic variation?
Heredity
102(2) pp. 120-126. [DOI]
[Web of Science]
[Pubmed]
Chapuis E., Martin G., Goudet J., 2008. Effects of selection and drift on G matrix evolution in a heterogeneous environment: a multivariate Qst-Fst Test with the freshwater snail Galba truncatula.
Genetics
180(4) pp. 2151-2161. [Document]
[DOI]
[Web of Science]
[Pubmed]
Facon B., Ravigne V., Goudet J., 2008. Gender-role alternation in the simultaneously hermaphroditic freshwater snail Physa acuta: not with the same partner.
Behavioral Ecology and Sociobiology
62(5) pp. 713-720. [Document]
[DOI]
[Web of Science]
Fagundes N J R, Ray N, Beaumont M, Neuenschwander S, Salzano F M, Bonatto S L & Excoffier L, 2008. Reply: Reply to Garrigan and Hammer: Ancient lineages and assimilation.
Proceedings of the National Academy of Sciences USA
105 pp. E4.
Henry P., Provan J., Goudet J., Guisan A., Jahadová S., Besnard G., 2008. A set of primers for plastid indels and nuclear microsatellites in the invasive plant Heracleum mantegazzianum (Apiaceae) and their transferability to Heracleum sphondylium.
Molecular Ecology Resources
8(1) pp. 161-163. [Document]
[DOI]
[Web of Science]
Martin G., Chapuis E., Goudet J., 2008. Multivariate QST-FST comparisons: a neutrality test for the evolution of the g matrix in structured populations.
Genetics
180(4) pp. 2135-2149. [Document]
[DOI]
[Web of Science]
[Pubmed]
Neuenschwander S Largiadèr CR Ray N Currat M Vonlanthen P Excoffier Laurent, 2008. Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): Inference under a Bayesian spatially explicit framework.
Molecular Ecology
17(3) pp. 757-772.
Neuenschwander S., Hospital F., Guillaume F., Goudet J., 2008. quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation.
Bioinformatics
24(13) pp. 1552-1553. [DOI]
[Web of Science]
[Pubmed]
Chapuis E., Trouve S., Facon B., Degen L., Goudet J., 2007. High quantitative and no molecular differentiation of a freshwater snail (Galba truncatula) between temporary and permanent water habitats.
Molecular Ecology
16(16) pp. 3484-3496. [Document]
[DOI]
[Web of Science]
[Pubmed]
David P., Pujol B., Viard F., Castella V., Goudet J., 2007. Reliable selfing rate estimates from imperfect population genetic data.
Molecular Ecology
16(12) pp. 2474-2487. [Document]
[DOI]
[Web of Science]
[Pubmed]
de Meeûs T., Goudet J., 2007. A step-by-step tutorial to use HierFstat to analyse populations hierarchically structured at multiple levels.
Infection, Genetics and Evolution
7(6) pp. 731-735. [Document]
[DOI]
[Web of Science]
[Pubmed]
Facon B., Sauteur L., Ravigne V., Goudet J., 2007. Effect of mating history on gender preference in the hermaphroditic snail physa acuta.
Animal Behaviour
74(5) pp. 1455-1461. [Document]
[DOI]
[Web of Science]
Fagundes N.J., Ray N., Beaumont M., Neuenschwander S., Salzano F.M., Bonatto S.L., Excoffier L., 2007. Statistical evaluation of alternative models of human evolution.
Proceedings of the National Academy of Sciences of the United States of America
104(45) pp. 17614-17619. [DOI]
[Web of Science]
[Pubmed]
Goudet J., Martin G., 2007. Under neutrality, Q(ST) < or = F(ST) when there is dominance in an island model.
Genetics
176(2) pp. 1371-1374. [Document]
[DOI]
[Web of Science]
[Pubmed]
Handley L.J., Manica A., Goudet J., Balloux F., 2007. Going the distance: human population genetics in a clinal world.
Trends in Genetics
23(9) pp. 432-439. [Document]
[DOI]
[Pubmed]
Martin G., Elena S.F., Lenormand T., 2007. Distributions of epistasis in microbes fit predictions from a fitness landscape model.
Nature Genetics
39(4) pp. 555-560. [Document]
[DOI]
[Pubmed]
Vonlanthen P., Excoffier L., Bittner D., Persat H., Neuenschwander S., Largiadèr C.R., 2007. Genetic analysis of potential postglacial watershed crossings in Central Europe by the bullhead (Cottus gobio L.).
Molecular Ecology
16(21) pp. 4572-4584. [DOI]
[Web of Science]
[Pubmed]
Evanno G., Castella E., Goudet J., 2006. Evolutionary aspects of population structure for molecular and quantitative traits in the freshwater snail Radix balthica.
Journal of Evolutionary Biology
19(4) pp. 1071-1082. [Document]
[DOI]
[Web of Science]
[Pubmed]
Facon B., Ravigne V., Goudet J., 2006. Experimental evidence of inbreeding avoidance in the hermaphroditic snail Physa acuta.
Evolutionary Ecology
20(5) pp. 395-406. [Document]
[DOI]
[Web of Science]
Glaettli M., Goudet J., 2006. Inbreeding effects on progeny sex ratio and gender variation in the gynodioecious Silene vulgaris (Caryophyllaceae).
New Phytologist
172(4) pp. 763-773. [Document]
[DOI]
[Web of Science]
[Pubmed]
Glaettli M., Goudet J., 2006. Variation in the intensity of inbreeding depression among successive life-cycle stages and generations in gynodioecious Silene vulgaris (Caryophyllaceae).
Journal of Evolutionary Biology
19(6) pp. 1995-2005. [Document]
[DOI]
[Web of Science]
[Pubmed]
Glaettli M., Pescatore L., Goudet J., 2006. Proximity-dependent pollen performance in Silene vulgaris.
Annals of Botany
98(2) pp. 431-437. [Document]
[DOI]
[Web of Science]
[Pubmed]
Goudet J., Büchi L., 2006. The effects of dominance, regular inbreeding and sampling design on Q(ST), an estimator of population differentiation for quantitative traits.
Genetics
172(2) pp. 1337-1347. [Document]
[DOI]
[Web of Science]
[Pubmed]
Guillaume F., Rougemont J., 2006. Nemo: An evolutionary and population genetics programming framework.
Bioinformatics - Applications Note
22(20) pp. 2556-2557. [Document]
Neuenschwander S., 2006. AQUASPLATCHE: A program to simulate genetic diversity in populations living in linear habitats.
Molecular Ecology Notes
6(3) pp. 583-585. [url editor site]
[Web of Science]
Ding A., Goudet J., 2005. Heterozygote advantage and the maintenance of polymorphism for multilocus traits.
Theoretical Population Biology
68(3) pp. 157-166. [Document]
[DOI]
[Web of Science]
[Pubmed]
Evanno G., Madec L., Arnaud J. F., 2005. Multiple paternity and postcopulatory sexual selection in a hermaphrodite: what influences sperm precedence in the garden snail Helix aspersa?
Molecular Ecology
14 pp. 805-812. [Document]
Evanno G., Regnaut S., Goudet J., 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.
Molecular Ecology
14(8) pp. 2611-2620. [Document]
[DOI]
[Web of Science]
[Pubmed]
Goudet J., 2005. HIERFSTAT, a package for R to compute and test hierarchical F-statistics.
Molecular Ecology Notes
5(1) pp. 184-186. [Document]
[DOI]
[Web of Science]
McCoy K. D., Chapuis E., Tirard C., Boulinier T., Michalakis Y., Le Bohec C., Le Maho Y., Gauthier-Clerc M., 2005. Recurrent evolution of host-specialized races in a globally distributed parasite.
Proceedings of the Royal Society of London. Series B.
272 pp. 2389-2395. [Document]
Trouve S., Degen L., Goudet J., 2005. Ecological components and evolution of selfing in the freshwater snail Galba truncatula.
Journal of Evolutionary Biology
18(2) pp. 358-370. [Document]
[DOI]
[Web of Science]
[Pubmed]
Koch A.M., Kuhn G., Fontanillas P., Fumagalli L., Goudet J., Sanders I.R., 2004. High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi.
Proceedings of the National Academy of Sciences of the United States of America
101(8) pp. 2369-2374. [DOI]
[Web of Science]
[Pubmed]
Trouve S., Ding A., Goudet J., 2004. Synergistic epistasis and alternative hypotheses.
Journal of Evolutionary Biology
17(6) pp. 1400-1401. [Document]
[DOI]
[Web of Science]
[Pubmed]
Juillet N., Freymond H., Degen L., Goudet J., 2003. Isolation and characterization of highly polymorphic microsatellite loci in the bladder campion, Silene vulgaris (Caryophyllaceae).
Molecular Ecology Notes
3(3) pp. 358-359. [DOI]
[Web of Science]
Naciri-Graven Y., Goudet J., 2003. The additive genetic variance after bottlenecks is affected by the number of loci involved in epistatic interactions.
Evolution;
57(4) pp. 706-716. [Document]
[DOI]
[Web of Science]
[Pubmed]
Trouvé S., Degen L., Renaud F., Goudet J., 2003. Evolutionary implications of a high selfing rate in the freshwater snail Lymnaea truncatula.
Evolution
57(10) pp. 2303-2314. [Document]
[DOI]
[Web of Science]
[Pubmed]
Balloux F., Goudet J., 2002. Statistical properties of population differentiation estimators under stepwise mutation in a finite island model.
Molecular Ecology
11(4) pp. 771-783. [Document]
[DOI]
[Web of Science]
[Pubmed]
Balloux F., Lugon-Moulin N., 02-2002. The estimation of population differentiation with microsatellite markers.
Molecular Ecology
11(2) pp. 155-165.
Goudet J., Keller L., 2002. The correlation between inbreeding and fitness: does allele size matter?
Trends in Ecology and Evolution
17(5) pp. 201-202. [Document]
[DOI]
[Web of Science]
Goudet J., Perrin N., Waser P., 2002. Tests for sex-biased dispersal using bi-parentally inherited genetic markers.
Molecular Ecology
11(6) pp. 1103-1114. [Document]
[DOI]
[Web of Science]
[Pubmed]
Kraushaar U., Goudet J., Blanckenhorn W.U., 2002. Geographical and altitudinal population genetic structure of two dung fly species with contrasting mobility and temperature preference.
Heredity
89(2) pp. 99-106. [Document]
[DOI]
[Web of Science]
[Pubmed]
Perrin N., Goudet J., 2001. Inbreeding, kinship, and the evolution of natal dispersal. pp. 123-142 in Clobert J. et al. (eds.) Dispersal. Oxford University Press, Oxford. [Document]
Petit E., Balloux F., Goudet J., 03-2001. Sex-biased dispersal in a migratory bat: a characterization using sex-specific demographic parameters.
Evolution
55(3) pp. 635-640. [Document]
[DOI]
[Web of Science]
[Pubmed]
Balloux F., Brünner H., Lugon-Moulin N., Hausser J., Goudet J., 2000. Microsatellites can be misleading: an empirical and simulation study.
Evolution
54(4) pp. 1414-1422. [Document]
[DOI]
[Web of Science]
[Pubmed]
de Meeûs T., Goudet J., 2000. Adaptive diversity in heterogeneous environments for populations regulated by a mixture of soft and hard selection.
Evolutionary Ecology Research
2(8) pp. 981-995. [Document]
[Web of Science]
Trouvé S., Degen L., Meunier C., Tirard C., Hurtrez-Boussès S., Durand P., Guégan J.F., Goudet J., Renaud F., 2000. Microsatellites in the hermaphroditic snail, Lymnaea truncatula, intermediate host of the liver fluke, Fasciola hepatica.
Molecular Ecology
9(10) pp. 1662-1664. [DOI]
[Web of Science]
[Pubmed]
Goudet J., 1999. An improved procedure for testing the effects of key innovations on rate of speciation.
American Naturalist
153(5) pp. 549-555. [Document]
[DOI]
[Web of Science]
Letocart M., Boerlin P., Boerlin-Petzold F., Goudet J., Baranton G., Perolat P., 1999. Genetic structure of the genus Leptospira by multilocus enzyme electrophoresis.
International Journal of Systematic Bacteriology
49(1) pp. 231-238. [DOI]
[Web of Science]
Lugon-Moulin N., Brunner H., Balloux F., Hausser J., Goudet J., 1999. Do riverine barriers, history or introgression shape the genetic structuring of a common shrew (Sorex araneus) population?
Heredity
83(2) pp. 155-161. [Document]
[DOI]
[Web of Science]
[Pubmed]
Lugon-Moulin N., Brunner H., Wyttenbach A., Hausser J., Goudet J., 1999. Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora : Soricidae).
Molecular Ecology
8(3) pp. 419-431. [Document]
[DOI]
[Web of Science]
Wyttenbach A., Goudet J., Cornuet J. M., Hausser J., 1999. Microsatellite variation reveals low genetic subdivision in a chromosome race of Sorex araneus (Mammalia, Insectivora).
Journal of Heredity
90(2) pp. 323-327. [DOI]
[Web of Science]
Balloux F., Ecoffey E., Fumagalli L., Goudet J., Wyttenbach A., Hausser J., 1998. Microsatellite conservation, polymorphism, and GC content in shrews of the genus Sorex (Insectivora, Mammalia).
Molecular Biology and Evolution
15(4) pp. 473-475. [Document]
[Web of Science]
[Pubmed]
Balloux F., Goudet J., Perrin N., 1998. Breeding system and genetic variance in the monogamous, semi-social shrew, Crocidura russula.
Evolution
52(4) pp. 1230-1235. [Document]
[Web of Science]
Giles B. E., Lundqvist E., Goudet J., 1998. Restricted gene flow and subpopulation differentiation in Silene dioica.
Heredity
80(6) pp. 715-723. [Document]
[DOI]
[Web of Science]
Savolainen V., Goudet J., 1998. Rate of gene sequence evolution and species diversification in flowering plants: a re-evaluation.
Proceedings of the Royal Society of London Series B-Biological Sciences
265(1396) pp. 603-607. [Document]
[DOI]
[Web of Science]
Chapuisat M., Goudet J., Keller L., 1997. Microsatellites reveal high population viscosity and limited dispersal in the ant Formica paralugubris.
Evolution
51(2) pp. 475-482. [Document]
[Web of Science]
Favre L., Balloux F., Goudet J., Perrin N., 1997. Female-biased dispersal in the monogamous mammal Crocidura russula: evidence from field data and microsatellite patterns.
Proceedings of the Royal Society of London Series B-Biological Sciences
264(1378) pp. 127-132. [Document]
[DOI]
[Web of Science]
[Pubmed]
Giles B. E., Goudet J., 1997. Case study of genetic structure in a plant metapopulation. pp. 429-454 in Hanski I., Gilpin M. E. (eds.) Metapopulation biology : ecology, genetics, and evolution. Academic Press, San Diego.
Giles B.E., Goudet J., 1997. Genetic differentiation in Silene dioica metapopulations: estimation of spatiotemporal effects in a successional plant species.
American Naturalist
149(3) pp. 507-526. [Document]
[DOI]
[Web of Science]
Boerlin P., Boerlin-Petzold F., Goudet J., Durussel C., Pagani J.L., Chave J.P., Bille J., 1996. Typing Candida albicans oral isolates from human immunodeficiency virus-infected patients by multilocus enzyme electrophoresis and DNA fingerprinting.
Journal of Clinical Microbiology
34(5) pp. 1235-1248. [Web of Science]
[Pubmed]
Estoup A., Solignac M., Cornuet J.M., Goudet J., Scholl A., 1996. Genetic differentiation of continental and island populations of Bombus terrestris (Hymenoptera: Apidae) in Europe.
Molecular Ecology
5(1) pp. 19-31. [DOI]
[Web of Science]
[Pubmed]
Goudet J., Raymond M., de Meeûs T., Rousset F., 1996. Testing differentiation in diploid populations.
Genetics
144(4) pp. 1933-1940. [Document]
[Web of Science]
[Pubmed]
Lugon-Moulin N., Wyttenbach A., Brunner H., Goudet J., Hausser J., 1996. Study of gene flow through a hybrid zone in the common shrew (Sorex araneus) using microsatellites.
Hereditas
125(2-3) pp. 159-168. [DOI]
[Web of Science]
Raybould A. F., Goudet J., Mogg R. J., Gliddon C. J., Gray A. J., 1996. Genetic structure of a linear population of Beta vulgaris ssp maritima (sea beet) revealed by isozyme and RFLP analysis.
Heredity
76(2) pp. 111-117. [DOI]
[Web of Science]
Goudet J., 1995. FSTAT (Version 1.2): A computer program to calculate F-statistics.
Journal of Heredity
86(6) pp. 485-486. [Web of Science]
Gliddon C., Goudet J., 1994. The genetic structure of metapopulations and conservation biology.
EXS
68 pp. 107-114. [Web of Science]
[Pubmed]
Perrin N., Keller L., Goudet J., 1994. Evolution in structured populations.
Bulletin de la Société Vaudoise de Sciences Naturelles
83(2) pp. 153-174.
