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Faculty of Biology and Medicine

Department of Ecology and Evolution

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Dr. Sara Fonseca Costa

Research interests

Curriculum vitae

Publications

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Publications

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2022 | 2021 | 2020 | 2017 | 2016 | 2015 |

2022

Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions

Fonseca Costa Sara S., Rosikiewicz Marta, Roux Julien, Wollbrett Julien, Bastian Frederic B., Robinson-Rechavi Marc, 2022. bioRxiv.

[DOI][serval:BIB_0D18349C923C]

2021

preview resource BIB_FD0CF4F734E7.P001

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.

Bastian F.B., Roux J., Niknejad A., Comte A., Fonseca Costa S.S., de Farias T.M., Moretti S., Parmentier G., de Laval V.R., Rosikiewicz M. et al., 2021/01/08. Nucleic acids research, 49 (D1) pp. D831-D847. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_FD0CF4F734E7]

Chromatin Immunoprecipitation (ChIP) from Mouse Liver Nuclei

Fonseca Costa SS, Ripperger JA, 2021. pp. 115-125 dans Brown Steven A. (eds.) Circadian Clocks: Methods and Protocols, Springer US.

[DOI][serval:BIB_B8CFCE544378]

2020

preview resource BIB_0223DAE8F649.P001

Single-cell transcriptomics allows novel insights into aging and circadian processes.

Fonseca Costa S.S., Robinson-Rechavi M., Ripperger J.A., 2020/12/04. Briefings in functional genomics, 19 (5-6) pp. 343-349. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_0223DAE8F649]

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, Mendes de Farias T, Moretti S, Parmentier G, Rech de Laval V, Rosikiewicz M et al., 2020/05/29..

[DOI][serval:BIB_65A649E27A82]

2017

Internal normalization of nascent RNA sequencing experiments to identify age-related changes of the mouse liver transcriptome

Fonseca Costa SS, Ripperger JA, 2017/01/03. Genomics and Computational Biology.

[DOI][serval:BIB_6B1A9D11BC40]

preview resource BIB_B5A3269F58C6.P001

Normalisation against Circadian and Age-Related Disturbances Enables Robust Detection of Gene Expression Changes in Liver of Aged Mice

Fonseca Costa SS, Wegmann D, Ripperger JA, 2017/01. PLOS ONE, 12 (1) pp. 1-16.

[DOI][serval:BIB_B5A3269F58C6]

2016

REV-ERBα influences the stability and nuclear localization of the glucocorticoid receptor.

Okabe T, Chavan R, Fonseca Costa SS, Brenna A, Ripperger JA, Albrecht U, 2016/09/29. Journal of cell science.

[DOI][Pmid][serval:BIB_DD2F3B38C648]

Liver-derived ketone bodies are necessary for food anticipation.

Chavan R, Feillet C, Fonseca Costa SS, Delorme JE, Okabe T, Ripperger JA, Albrecht U, 2016/02/03. Nature communications.

[DOI][Pmid][serval:BIB_A8F382921D7D]

2015

Impact of the circadian clock on the aging process.

Fonseca Costa SS, Ripperger JA, 2015/03/06. Frontiers in neurology.

[DOI][Pmid][serval:BIB_B2A963F80370]

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