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Faculty of Biology and Medicine

Department of Ecology and Evolution

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Dr. Natacha Glover

Research interests

Curriculum vitae

Publications

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Publications

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In Press | 2023 | 2021 | 2020 | 2019 | 2018 | 2017 | 2015 |

In Press

OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.

Altenhoff A.M., Warwick Vesztrocy A., Bernard C., Train C.M., Nicheperovich A., Prieto Baños S., Julca I., Moi D., Nevers Y., Majidian S. et al. Nucleic acids research. Peer-reviewed.

[DOI][Pmid][serval:BIB_B96DA0D62CDE]

2023

Protein S-acylation controls the subcellular localization and biological activity of PHYTOCHROME KINASE SUBSTRATE.

Lopez Vazquez A., Allenbach Petrolati L., Legris M., Dessimoz C., Lampugnani E.R., Glover N., Fankhauser C., 2023/06/26. The Plant cell, 35 (7) pp. 2635-2653. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_58EBDD8BFA7C]

Protein length distribution is remarkably uniform across the tree of life.

Nevers Y., Glover N.M., Dessimoz C., Lecompte O., 2023/06/08. Genome biology, 24 (1) p. 135. Peer-reviewed.

[DOI][Pmid][serval:BIB_2F921C9DBF4A]

Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees.

Sarton-Lohéac G., Nunes da Silva C.G., Mazel F., Baud G., de Bakker V., Das S., El Chazli Y., Ellegaard K., Garcia-Garcera M., Glover N. et al., 2023/04/25. mBio, 14 (2) pp. e0353822. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_43DDCAB27B31]

2021

Ten Years of Collaborative Progress in the Quest for Orthologs.

Linard B., Ebersberger I., McGlynn S.E., Glover N., Mochizuki T., Patricio M., Lecompte O., Nevers Y., Thomas P.D., Gabaldón T. et al., 2021/07/29. Molecular biology and evolution, 38 (8) pp. 3033-3045. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_69FF3D639B70]

Homoeolog Inference Methods Requiring Bidirectional Best Hits or Synteny Miss Many Pairs.

Glover N., Sheppard S., Dessimoz C., 2021/06/08. Genome biology and evolution, 13 (6) pp. evab077. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_9739D4F55417]

preview resource BIB_37EBF9C1AD84.P001

Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism.

Zajac N., Zoller S., Seppälä K., Moi D., Dessimoz C., Jokela J., Hartikainen H., Glover N., 2021/03/01. Genome biology and evolution, 13 (3) pp. evab010. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_37EBF9C1AD84]

preview resource BIB_A827EF929B38.P001

OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.

Altenhoff A.M., Train C.M., Gilbert K.J., Mediratta I., Mendes de Farias T., Moi D., Nevers Y., Radoykova H.S., Rossier V., Warwick Vesztrocy A. et al., 2021/01/08. Nucleic acids research, 49 (D1) pp. D373-D379. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_A827EF929B38]

2020

preview resource BIB_EBF2C2C4065D.P001

The Quest for Orthologs benchmark service and consensus calls in 2020.

Altenhoff A.M., Garrayo-Ventas J., Cosentino S., Emms D., Glover N.M., Hernández-Plaza A., Nevers Y., Sundesha V., Szklarczyk D., Fernández J.M. et al., 2020/07/02. Nucleic acids research, 48 (W1) pp. W538-W545. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_EBF2C2C4065D]

How to build phylogenetic species trees with OMA.

Dylus D., Nevers Y., Altenhoff A.M., Gürtler A., Dessimoz C., Glover N.M., 2020. F1000Research, 9 p. 511. Peer-reviewed.

[DOI][Pmid][serval:BIB_D8D72D90D99B]

preview resource BIB_B7D7E8705809.P001

Identifying orthologs with OMA: A primer.

Zahn-Zabal M., Dessimoz C., Glover N.M., 2020. F1000Research, 9 p. 27. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_B7D7E8705809]

2019

Advances and Applications in the Quest for Orthologs.

Glover N., Dessimoz C., Ebersberger I., Forslund S.K., Gabaldón T., Huerta-Cepas J., Martin M.J., Muffato M., Patricio M., Pereira C. et al., 2019/10/01. Molecular biology and evolution, 36 (10) pp. 2157-2164. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_A36FE75880A9]

preview resource BIB_D405BD0232C3.P001

OMA standalone: orthology inference among public and custom genomes and transcriptomes.

Altenhoff A.M., Levy J., Zarowiecki M., Tomiczek B., Warwick Vesztrocy A., Dalquen D.A., Müller S., Telford M.J., Glover N.M., Dylus D. et al., 2019/07. Genome research, 29 (7) pp. 1152-1163. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_D405BD0232C3]

Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.

Ellegaard K.M., Brochet S., Bonilla-Rosso G., Emery O., Glover N., Hadadi N., Jaron K.S., van der Meer J.R., Robinson-Rechavi M., Sentchilo V. et al., 2019/05. Molecular ecology, 28 (9) pp. 2224-2237. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_37C4AFA6D4D6]

Inferring Orthology and Paralogy.

Altenhoff A.M., Glover N.M., Dessimoz C., 2019. Methods in molecular biology, 1910 pp. 149-175. Peer-reviewed.

[DOI][Pmid][serval:BIB_062874BB14CB]

preview resource BIB_D4984F5E8391.P001

Assigning confidence scores to homoeologs using fuzzy logic.

Glover N.M., Altenhoff A., Dessimoz C., 2019. PeerJ, 6 pp. e6231. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_D4984F5E8391]

2018

preview resource BIB_FC0F04688D1D.P001

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.

Altenhoff A.M., Glover N.M., Train C.M., Kaleb K., Warwick Vesztrocy A., Dylus D., de Farias T.M., Zile K., Stevenson C., Long J. et al., 2018/01/04. Nucleic acids research, 46 (D1) pp. D477-D485. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_FC0F04688D1D]

2017

preview resource BIB_7D03376859BC.P001

Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference

Train C.-M., Glover N.M., Gonnet G.H., Altenhoff A.M., Dessimoz C., 2017. Bioinformatics, 33 (14) pp. i75-i82.

[URN][DOI][WoS][serval:BIB_7D03376859BC]

2015

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements

Altenhoff Adrian M, Skunca Nives, Glover Natasha, Train Clément-Marie, Sueki Anna, Pilizota Ivana, Gori Kevin, Tomiczek Bartlomiej, Müller Steven, Redestig Henning et al., 2015. Nucleic acids research, 43 (Database issue) pp. D240--9.

[serval:BIB_0E374421DCD4]

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