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Department of Oncology

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Publications | Masters and Phd thesis

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In Press | 2021 | 2020 | ...

The human CD8 T stem cell-like memory phenotype appears in the acute phase in Yellow Fever virus vaccination

Marraco Silvia A. Fuertes, Bovay Amandine, Nassiri Sina, Maby-El Hajjami Hélène, Ouertatani-Sakouhi Hajer, Held Werner, Speiser Daniel E..

[DOI][serval:BIB_D644B7DF7CE4]

In Press

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.

Andreatta M., Carmona S.J. Bioinformatics. Peer-reviewed.

[DOI][Pmid][serval:BIB_D3F01C447F08]

Early drop of circulating T cells negatively correlates with the protective immune response to Yellow Fever vaccination.

Bovay A., Speiser D.E., Fuertes Marraco S.A. Human vaccines & immunotherapeutics pp. 1-8. Peer-reviewed.

[DOI][Pmid][serval:BIB_CF63CEAB6BA5]

Lactate modulation of immune responses in inflammatory versus tumour microenvironments.

Certo M., Tsai C.H., Pucino V., Ho P.C., Mauro C. Nature reviews. Immunology. Peer-reviewed.

[DOI][Pmid][serval:BIB_EEC32C274BAF]

Enforced PGC-1α expression promotes CD8 T cell fitness, memory formation and antitumor immunity.

Dumauthioz N., Tschumi B., Wenes M., Marti B., Wang H., Franco F., Li W., Lopez-Mejia I.C., Fajas L., Ho P.C. et al. Cellular & molecular immunology. Peer-reviewed.

[DOI][Pmid][serval:BIB_D554C59D6F3C]

Severe COVID-19 patients exhibit an ILC2 NKG2D<sup>+</sup> population in their impaired ILC compartment.

Gomez-Cadena A., Spehner L., Kroemer M., Khelil M.B., Bouiller K., Verdeil G., Trabanelli S., Borg C., Loyon R., Jandus C. Cellular & molecular immunology. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_C1457954C261]

At the bench: Pre‐clinical evidence for multiple functions of CXCR4 in cancer

Luker Gary D, Yang Jinming, Richmond Ann, Scala Stefania, Festuccia Claudio, Schottelius Margret, Wester Hans-Jürgen, Zimmermann Johann Journal of Leukocyte Biology. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_55863C1885F3]

Development and aging of the lymphatic vascular system.

Petrova T.V., González-Loyola A. Advanced drug delivery reviews. Peer-reviewed.

[DOI][Pmid][serval:BIB_24BBE73AFB66]

Optimized low-dose combinatorial drug treatment boosts selectivity and efficacy of colorectal carcinoma treatment.

Zoetemelk M., Ramzy G.M., Rausch M., Koessler T., van Beijnum J.R., Weiss A., Mieville V., Piersma S.R., de Haas R.R., Delucinge-Vivier C. et al. Molecular oncology. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_6B1C1DF10DF7]

2021

Optimized gene engineering of murine CAR-T cells reveals the beneficial effects of IL-15 coexpression.

Lanitis E., Rota G., Kosti P., Ronet C., Spill A., Seijo B., Romero P., Dangaj D., Coukos G., Irving M., 2021/02/01. The Journal of experimental medicine, 218 (2) pp. e20192203. Peer-reviewed.

[DOI][Pmid][serval:BIB_75DE24FE756B]

2020

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

Chong Chloe, Müller Markus, Pak HuiSong, Harnett Dermot, Huber Florian, Grun Delphine, Leleu Marion, Auger Aymeric, Arnaud Marion, Stevenson Brian J. et al., 2020/12. Nature Communications, 11 (1). Peer-reviewed.

[DOI][Pmid][serval:BIB_03EA897A1141]

Biological evaluation of new TEM1 targeting recombinant antibodies for radioimmunotherapy: in vitro, in vivo and in silico studies.

D'Onofrio A., Gano L., Melo R., Mendes F., Cristina Oliveira M., Denoël T., Schaefer N., Viertl D., Fierle J., Coukos G. et al., 2020/11/30. European journal of pharmaceutics and biopharmaceutics. Peer-reviewed.

[DOI][Pmid][serval:BIB_95FD98ADDB6D]

Central memory CD8<sup>+</sup> T cells derive from stem-like Tcf7<sup>hi</sup> effector cells in the absence of cytotoxic differentiation.

Pais Ferreira D., Silva J.G., Wyss T., Fuertes Marraco S.A., Scarpellino L., Charmoy M., Maas R., Siddiqui I., Tang L., Joyce J.A. et al., 2020/11/17. Immunity, 53 (5) pp. 985-1000.e11. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_A0FD9237651F]

Structural dissimilarity from self drives neoepitope escape from immune tolerance.

Devlin J.R., Alonso J.A., Ayres C.M., Keller GLJ, Bobisse S., Vander Kooi C.W., Coukos G., Gfeller D., Harari A., Baker B.M., 2020/11. Nature chemical biology, 16 (11) pp. 1269-1276. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_186F0AD1C570]

Brain Metastasis Cell Lines Panel: A Public Resource of Organotropic Cell Lines.

Valiente M., Van Swearingen AED, Anders C.K., Bairoch A., Boire A., Bos P.D., Cittelly D.M., Erez N., Ferraro G.B., Fukumura D. et al., 2020/10/15. Cancer Research, 80 (20) pp. 4314-4323. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_47CE3A073F78]

Uncoupling interferon signaling and antigen presentation to overcome immunotherapy resistance due to JAK1 loss in melanoma.

Kalbasi A., Tariveranmoshabad M., Hakimi K., Kremer S., Campbell K.M., Funes J.M., Vega-Crespo A., Parisi G., Champekar A., Nguyen C. et al., 2020/10/14. Science translational medicine, 12 (565) pp. eabb0152. Peer-reviewed.

[DOI][Pmid][serval:BIB_CF3704461FDA]

T-cell repertoire analysis and metrics of diversity and clonality.

Chiffelle J., Genolet R., Perez M.A., Coukos G., Zoete V., Harari A., 2020/10. Current opinion in biotechnology, 65 pp. 284-295. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_598F3EDCA20B]

High versus low dose irradiation for tumor immune reprogramming.

de Olza M.O., Bourhis J., Irving M., Coukos G., Herrera F.G., 2020/10. Current opinion in biotechnology, 65 pp. 268-283. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_330632946BBD]

Metabolic and epigenetic regulation of T-cell exhaustion.

Franco F., Jaccard A., Romero P., Yu Y.R., Ho P.C., 2020/10. Nature metabolism, 2 (10) pp. 1001-1012. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_C6CC159592FD]

Organoid technology and applications in cancer immunotherapy and precision medicine.

Homicsko K., 2020/10. Current opinion in biotechnology, 65 pp. 242-247. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_BB24203665BA]

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Masters thesis

Publications (2)

Effects of baseline medication on immune-related adverse events occurring during combination immunotherapy: an exploratory study

HOSTETTLER M., 2019. 27, Université de Lausanne, Faculté de biologie et médecine, MICHIELIN O. (dir.).

[serval:BIB_481488956F55]

preview resource BIB_AD0E970E95CE.P001

CANCER IMMUNOTHERAPY WITH VEGFR-3 TARGETED CAR T-CELLS

KIRITSIS K., 2016. 32, Université de Lausanne, Faculté de biologie et médecine, COUKOS G. (dir.).

[URN][serval:BIB_AD0E970E95CE]

Phd thesis

In preparation (1)

preview resource BIB_AFACC70D6A3C.P002

Developmental origin of central memory CD8+ T cells

Pais Ferreira Daniela, Université de Lausanne, Faculté de biologie et médecine, Held Werner (dir.).

[URN][serval:BIB_AFACC70D6A3C]

Publications (14)

preview resource BIB_22651FF6D862.P002

Novel antibody-based therapeutic approaches for redirecting T cell effector functions towards tumors expressing CD248 (TEM1)

Fierle Julie Katrin, 2020/04/06., Université de Lausanne, Faculté de biologie et médecine, Coukos George (dir.).

[URN][serval:BIB_22651FF6D862]

preview resource BIB_7417869DA8E8.P002

Development of novel methods for high-throughput analyses of human tumor antigen-specific CD4 T cell responses

Rockinger Georg Alexander, 2020/02/28., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_7417869DA8E8]

An Integrated Immunopeptidomics and Proteogenomics Framework to Discover Non-Canonical Targets for Cancer Immunotherapy

CHONG Chloe, 2020., Université de Lausanne, Faculté de biologie et médecine, Coukos George (dir.).

[URN][serval:BIB_E6A1E69D2351]

Enforced PGC-1ɑ expression promotes CD8 T cell fitness, memory formation and anti-tumor immunity

DUMAUTHIOZ Nina, 2020., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[serval:BIB_2D4ABE6915B2]

CD36-mediated metabolic adaptation supports regulatory T cell survival and function in tumors

Wang Haiping, 2020., Université de Lausanne, Faculté de biologie et médecine, Ho Ping-Chih (dir.).

[serval:BIB_CD6DDB37D481]

Control of perivascular cell differentiation by endothelial cells

Wetterwald Laureline, 2020., Université de Lausanne, Faculté de biologie et médecine, Petrova Tatiana (dir.).

[serval:BIB_B26A56531CD1]

preview resource BIB_5EBE536D2CB3.P003

Molecular and functional immune determinants associated with the optimal immunogenicity of Yellow Fever vaccination in humans

Bovay Amandine Xuan Kim, 2019/06/07., Université de Lausanne, Faculté de biologie et médecine, Speiser Daniel (dir.).

[URN][serval:BIB_5EBE536D2CB3]

Cytolytic CD4 T cells: Analysis of a novel T cell candidate for human tumor immunotherapy

Cachot Amélie, 2019., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[serval:BIB_F0A6BE95CE46]

Molecular mechanisms regulating TCR affinity-improved T cells against the NY-ESO-1 tumor antigen

ERDES Efe, 2019., Université de Lausanne, Faculté de biologie et médecine, Rufer Nathalie (dir.).

[serval:BIB_6F539C8E9170]

Identification and Isolation of Highly Functional Tumor-Specific CD8 T Cenis for Adoptive Cell Transfer Therapy

MAGNIN Morgane, 2019., Université de Lausanne, Faculté de biologie et médecine, HARARI Alexandre (dir.).

[URN][serval:BIB_E25A9568380B]

Molecular mechanisms of lymphatic vascular maintenance and repair

Saygili-Demir Cansaran, 2019., Université de Lausanne, Faculté de biologie et médecine, Petrova Tatiana (dir.).

[serval:BIB_A491C5859416]

preview resource BIB_08CEE3B79D75.P003

Molecular determinants governing CD8+ T cell mediated anti-tumor immunity

Martinez-Usatorre Amaia, 2018/04/27. 117, Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_08CEE3B79D75]

preview resource BIB_786BC3B46C6D.P002

Harnessing iNKT and CD8 T cells for Immunotherapy of Cancer

Tschumi Benjamin Olivier, 2018/03/13. 117, Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_786BC3B46C6D]

preview resource BIB_9F9512EEBA1F.P001

Characterization of local and systemic immune-modulation in melanoma patients

Bordy N., 2015. 204, Université de Lausanne, Faculté de biologie et médecine, Speiser D., Swartz M. (dir.).

[URN][serval:BIB_9F9512EEBA1F]

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