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Department of Oncology

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Publications | Masters and Phd thesis

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In Press | 2021 | ...

The human CD8 T stem cell-like memory phenotype appears in the acute phase in Yellow Fever virus vaccination

Marraco Silvia A. Fuertes, Bovay Amandine, Nassiri Sina, Maby-El Hajjami Hélène, Ouertatani-Sakouhi Hajer, Held Werner, Speiser Daniel E..

[DOI][serval:BIB_D644B7DF7CE4]

In Press

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.

Andreatta M., Carmona S.J. Bioinformatics. Peer-reviewed.

[DOI][Pmid][serval:BIB_D3F01C447F08]

Dominant monoallelic variant in the PAK2 gene causes Knobloch syndrome type 2.

Antonarakis S.E., Holoubek A., Rapti M., Rademaker J., Meylan J., Iwaszkiewicz J., Zoete V., Wilson C., Taylor J., Ansar M. et al. Human molecular genetics. Peer-reviewed.

[DOI][Pmid][serval:BIB_67FE6F734917]

Enforced PGC-1α expression promotes CD8 T cell fitness, memory formation and antitumor immunity.

Dumauthioz N., Tschumi B., Wenes M., Marti B., Wang H., Franco F., Li W., Lopez-Mejia I.C., Fajas L., Ho P.C. et al. Cellular & molecular immunology. Peer-reviewed.

[DOI][Pmid][serval:BIB_D554C59D6F3C]

Constant regulation for stable CD8 T cell functional avidity and its possible implications for cancer immunotherapy

Gilfillan C.B., Hebeisen M., Rufer N., Speiser D.E. European journal of immunology. Peer-reviewed.

[DOI][Pmid][serval:BIB_DE9645D7CF3A]

At the bench: Pre‐clinical evidence for multiple functions of CXCR4 in cancer

Luker Gary D, Yang Jinming, Richmond Ann, Scala Stefania, Festuccia Claudio, Schottelius Margret, Wester Hans-Jürgen, Zimmermann Johann Journal of Leukocyte Biology. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_55863C1885F3]

Probing the Conformational Dynamics of Affinity-Enhanced T Cell Receptor Variants upon Binding the Peptide-Bound Major Histocompatibility Complex by Hydrogen/Deuterium Exchange Mass Spectrometry.

Merkle P.S., Trabjerg E., Hongjian S., Ferber M., Cuendet M.A., Jørgensen TJD, Luescher I., Irving M., Zoete V., Michielin O. et al. Biochemistry. Peer-reviewed.

[DOI][Pmid][serval:BIB_CF7649E47A67]

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.

Waman V.P., Sen N., Varadi M., Daina A., Wodak S.J., Zoete V., Velankar S., Orengo C. Briefings in bioinformatics. Peer-reviewed.

[DOI][Pmid][serval:BIB_C745D183BB85]

2021

Immune cell infiltration in colonic cancer: correlation between biopsy and surgical specimens.

Bordry N., Germann M., Foukas P.G., Sempoux C., Yan P., Dormond O., Speiser D.E., Demartines N., Sauvain M.O., 2021/04/01. The British Journal of Surgery. Peer-reviewed.

[DOI][Pmid][serval:BIB_319A12C734E8]

Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology.

Krebs F.S., Zoete V., Trottet M., Pouchon T., Bovigny C., Michielin O., 2021/03/18. NPJ precision oncology, 5 (1) p. 19. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_A929D45E3DA0]

Durable Suppression of Acquired MEK Inhibitor Resistance in Cancer by Sequestering MEK from ERK and Promoting Antitumor T-cell Immunity.

Hong A., Piva M., Liu S., Hugo W., Lomeli S.H., Zoete V., Randolph C.E., Yang Z., Wang Y., Lee J.J. et al., 2021/03. Cancer discovery, 11 (3) pp. 714-735. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_642840149803]

Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting.

Schmidt J., Smith A.R., Magnin M., Racle J., Devlin J.R., Bobisse S., Cesbron J., Bonnet V., Carmona S.J., Huber F. et al., 2021/02/16. Cell reports. Medicine, 2 (2) p. 100194. Peer-reviewed.

[DOI][Pmid][serval:BIB_9AA90BD897A9]

Non-genetic evolution drives lung adenocarcinoma spatial heterogeneity and progression.

Tavernari D., Battistello E., Dheilly E., Petruzzella A.S., Mina M., Sordet-Dessimoz J., Peters S., Krueger T., Gfeller D., Riggi N. et al., 2021/02/09. Cancer discovery. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_F6D4BAEDCE1E]

Not All Tumor-Infiltrating CD8+ T Cells Are Created Equal.

Held W., Speiser D.E., 2021/02/08. Cancer cell, 39 (2) pp. 145-147. Peer-reviewed.

[DOI][Pmid][serval:BIB_E8253423DFBD]

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition).

Klionsky D.J., Abdel-Aziz A.K., Abdelfatah S., Abdellatif M., Abdoli A., Abel S., Abeliovich H., Abildgaard M.H., Abudu Y.P., Acevedo-Arozena A. et al., 2021/02/08. Autophagy pp. 1-382. Peer-reviewed.

[DOI][Pmid][serval:BIB_345DDF9FE897]

Inflammatory B cells correlate with failure to checkpoint blockade in melanoma patients.

de Jonge K., Tillé L., Lourenco J., Maby-El Hajjami H., Nassiri S., Racle J., Gfeller D., Delorenzi M., Verdeil G., Baumgaertner P. et al., 2021/02/02. Oncoimmunology, 10 (1) p. 1873585. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_A6249CF0D69F]

Optimized gene engineering of murine CAR-T cells reveals the beneficial effects of IL-15 coexpression.

Lanitis E., Rota G., Kosti P., Ronet C., Spill A., Seijo B., Romero P., Dangaj D., Coukos G., Irving M., 2021/02/01. The Journal of experimental medicine, 218 (2) pp. e20192203. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_75DE24FE756B]

preview resource BIB_7FDE10B2A046.P001

Tumor-specific cytolytic CD4 T cells mediate immunity against human cancer.

Cachot A., Bilous M., Liu Y.C., Li X., Saillard M., Cenerenti M., Rockinger G.A., Wyss T., Guillaume P., Schmidt J. et al., 2021/02. Science advances, 7 (9) pp. eabe3348. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_7FDE10B2A046]

Severe COVID-19 patients exhibit an ILC2 NKG2D<sup>+</sup> population in their impaired ILC compartment.

Gomez-Cadena A., Spehner L., Kroemer M., Khelil M.B., Bouiller K., Verdeil G., Trabanelli S., Borg C., Loyon R., Jandus C., 2021/02. Cellular & molecular immunology, 18 (2) pp. 484-486. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_C1457954C261]

Impact of DOTA Conjugation on Pharmacokinetics and Immunoreactivity of [177Lu]Lu-1C1m-Fc, an Anti TEM-1 Fusion Protein Antibody in a TEM-1 Positive Tumor Mouse Model.

Delage J.A., Faivre-Chauvet A., Barbet J., Fierle J.K., Schaefer N., Coukos G., Viertl D., Dunn S.M., Gnesin S., Prior J.O., 2021/01/13. Pharmaceutics, 13 (1) p. 96. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_28C0A40301A0]

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Masters thesis

Publications (2)

Effects of baseline medication on immune-related adverse events occurring during combination immunotherapy: an exploratory study

HOSTETTLER M., 2019. 27, Université de Lausanne, Faculté de biologie et médecine, MICHIELIN O. (dir.).

[serval:BIB_481488956F55]

preview resource BIB_AD0E970E95CE.P001

CANCER IMMUNOTHERAPY WITH VEGFR-3 TARGETED CAR T-CELLS

KIRITSIS K., 2016. 32, Université de Lausanne, Faculté de biologie et médecine, COUKOS G. (dir.).

[URN][serval:BIB_AD0E970E95CE]

Phd thesis

In preparation (1)

preview resource BIB_AFACC70D6A3C.P002

Developmental origin of central memory CD8+ T cells

Pais Ferreira Daniela, Université de Lausanne, Faculté de biologie et médecine, Held Werner (dir.).

[URN][serval:BIB_AFACC70D6A3C]

Publications (17)

preview resource BIB_5EF9D31ADF10.P002

Characterization of the interaction between circulating human Innate Lymphoid Cell Progenitors and endothelial cells

Vanoni Giulia, 2021/02/10., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_5EF9D31ADF10]

preview resource BIB_22651FF6D862.P002

Novel antibody-based therapeutic approaches for redirecting T cell effector functions towards tumors expressing CD248 (TEM1)

Fierle Julie Katrin, 2020/04/06., Université de Lausanne, Faculté de biologie et médecine, Coukos George (dir.).

[URN][serval:BIB_22651FF6D862]

preview resource BIB_7417869DA8E8.P002

Development of novel methods for high-throughput analyses of human tumor antigen-specific CD4 T cell responses

Rockinger Georg Alexander, 2020/02/28., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_7417869DA8E8]

An Integrated Immunopeptidomics and Proteogenomics Framework to Discover Non-Canonical Targets for Cancer Immunotherapy

CHONG Chloe, 2020., Université de Lausanne, Faculté de biologie et médecine, Coukos George (dir.).

[URN][serval:BIB_E6A1E69D2351]

Novel Combinatorial Gene-Engineered T-cell Transfer Strategy that Reprograms the Tumor Immune Landscape for Enhanced Tumor Control and Survival

Corria Osorio Angel de Jesus, 2020., Université de Lausanne, Faculté de biologie et médecine, Coukos George (dir.).

[serval:BIB_40F8F4BC12AB]

Enforced PGC-1ɑ expression promotes CD8 T cell fitness, memory formation and anti-tumor immunity

DUMAUTHIOZ Nina, 2020., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[serval:BIB_2D4ABE6915B2]

preview resource BIB_C4EC0725191A.P001

D-AREdevil: a novel approach for discovering disease-associated rare cell populations in mass cytometry data

SUFFIOTTI Madeleine, 2020., Université de Lausanne, Faculté de biologie et médecine, Pantaleo Giuseppe (dir.).

[URN][serval:BIB_C4EC0725191A]

CD36-mediated metabolic adaptation supports regulatory T cell survival and function in tumors

Wang Haiping, 2020., Université de Lausanne, Faculté de biologie et médecine, Ho Ping-Chih (dir.).

[serval:BIB_CD6DDB37D481]

Control of perivascular cell differentiation by endothelial cells

Wetterwald Laureline, 2020., Université de Lausanne, Faculté de biologie et médecine, Petrova Tatiana (dir.).

[serval:BIB_B26A56531CD1]

preview resource BIB_5EBE536D2CB3.P003

Molecular and functional immune determinants associated with the optimal immunogenicity of Yellow Fever vaccination in humans

Bovay Amandine Xuan Kim, 2019/06/07., Université de Lausanne, Faculté de biologie et médecine, Speiser Daniel (dir.).

[URN][serval:BIB_5EBE536D2CB3]

Cytolytic CD4 T cells: Analysis of a novel T cell candidate for human tumor immunotherapy

Cachot Amélie, 2019., Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[serval:BIB_F0A6BE95CE46]

Molecular mechanisms regulating TCR affinity-improved T cells against the NY-ESO-1 tumor antigen

ERDES Efe, 2019., Université de Lausanne, Faculté de biologie et médecine, Rufer Nathalie (dir.).

[serval:BIB_6F539C8E9170]

Identification and Isolation of Highly Functional Tumor-Specific CD8 T Cenis for Adoptive Cell Transfer Therapy

MAGNIN Morgane, 2019., Université de Lausanne, Faculté de biologie et médecine, HARARI Alexandre (dir.).

[URN][serval:BIB_E25A9568380B]

Molecular mechanisms of lymphatic vascular maintenance and repair

Saygili-Demir Cansaran, 2019., Université de Lausanne, Faculté de biologie et médecine, Petrova Tatiana (dir.).

[serval:BIB_A491C5859416]

preview resource BIB_08CEE3B79D75.P003

Molecular determinants governing CD8+ T cell mediated anti-tumor immunity

Martinez-Usatorre Amaia, 2018/04/27. 117, Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_08CEE3B79D75]

preview resource BIB_786BC3B46C6D.P002

Harnessing iNKT and CD8 T cells for Immunotherapy of Cancer

Tschumi Benjamin Olivier, 2018/03/13. 117, Université de Lausanne, Faculté de biologie et médecine, Romero Pedro (dir.).

[URN][serval:BIB_786BC3B46C6D]

preview resource BIB_9F9512EEBA1F.P001

Characterization of local and systemic immune-modulation in melanoma patients

Bordy N., 2015. 204, Université de Lausanne, Faculté de biologie et médecine, Speiser D., Swartz M. (dir.).

[URN][serval:BIB_9F9512EEBA1F]

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