Group of Sven Bergmann



Sven Bergmann heads the Computational Biology Group since 2005 when he joined the Faculty of Biology and Medicine at the University of Lausanne. Sven became Associate Professor in 2010 after successfully completing his tenure track. He is also affiliated with the Swiss Institute of Bioinformatics since 2006.

Sven studied theoretical particle physics with Prof. Yosef Nir at the Weizmann Institute of Science (Israel) where he received his PhD in 2001 for studies of neutrino oscillations and CP violation. He then joined the laboratory of Prof. Naama Barkai in the Department of Molecular Genetics at the same institute, where he first worked as a Koshland postdoctoral fellow and later as staff scientist.




Research Summary

The Computational Biology Group has interest in various fields related to Computational Biology, with two main directions: We develop and apply methods for the integrative analysis of large-scale biological and clinical data. This includes molecular phenotypes like gene-expression and metabolomics data, as well as organismal phenotypes (ranging from patient data to growth assays). We focus particularly on relating these phenotypes to genotypes such as "Single Nucleotide Polymorphisms" (SNPs) and "Copy Number Variants" (CNVs) measured by microarrays or next-generation sequencing. We develop and apply novel tools that facilitate Genome-wide Association Studies (GWAS) and their integration across multiple datasets and with pathway collections. Our goal is to move towards predictive models in order to improve the diagnosis, prevention and treatment of disease. A complementary direction of research pertains to relatively small genetic networks, whose components are well-known. We collaborate closely with experts of the field to study biological systems that can be modeled quantitatively. Our goal in developing such models is not only to give an approximate description of system, but also to obtain a better understanding of its properties. For example, regulatory networks evolved to function reliably under ever-changing environmental conditions. This notion of robustness can guide computational analysis and provide constraints on models that complement those from direct measurements of the system's output.

For further information concerning Sven Bergmann's group and research interests, please visit his wiki page.

A publication list is available here (or check Google Scholar).

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Prof. Sven Bergmann

Executive Assistant

Suzanne Soto
+41 21 692 54 56