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Ecospat - Spatial Ecology Group

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  Habitat Suitability and Distribution Models

Peer-reviewed papers & theses

Publications | Masters and Phd thesis

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Publications

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In Press | 2023 | 2022 | ...

In Press

preview resource BIB_79EC6A21B8EC.P001

N‐SDM: a high‐performance computing pipeline for Nested Species Distribution Modelling

Adde Antoine, Rey Pierre-Louis, Brun Philipp, Külling Nathan, Fopp Fabian, Altermatt Florian, Broennimann Olivier, Lehmann Anthony, Petitpierre Blaise, Zimmermann Niklaus E. et al. Ecography. Peer-reviewed.

[URN][DOI][serval:BIB_79EC6A21B8EC]

Small to train, small to test: Dealing with low sample size in model evaluation

Collart Flavien, Guisan Antoine Ecological Informatics, 102106.

[URN][DOI][serval:BIB_DDA1566B06B4]

Taxonomic and functional biogeographies of soil bacterial communities across the Tibet plateau are better explained by abiotic conditions than distance and plant community composition.

Liang Q., Mod H.K., Luo S., Ma B., Yang K., Chen B., Qi W., Zhao Z., Du G., Guisan A. et al. Molecular ecology. Peer-reviewed.

[DOI][Pmid][serval:BIB_F04794709DBF]

Into the microbial niche.

Malard L.A., Guisan A. Trends in ecology & evolution. Peer-reviewed.

[DOI][Pmid][serval:BIB_973296C056F3]

Transmission mode and dispersal traits correlate with host specificity in mammalian gut microbes.

Mazel F., Guisan A., Parfrey L.W. Molecular ecology. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_7215CEA1DC2E]

Modelling invasion by wattles: challenges and applications

Vicente J.R., Pinto E., Guisan A., Kueffer C., Marchante E., Kühn I., Cabral J.A., Gonçalves J., Honrado J.P., Alonso J. et al. dans Acacia Invasions, Richardson, D..

[serval:BIB_7C7B8B67CD6F]

2023

Disentangling climate change from air pollution effects on epiphytic bryophytes

Hutsemékers Virginie, Mouton Lea, Westenbohm Hannah, Collart Flavien, Vanderpoorten Alain, 2023/04/22. Global Change Biology. Peer-reviewed.

[DOI][Pmid][serval:BIB_5443AFED11CC]

Landscape structure is a key driver of soil protist diversity in meadows in the Swiss Alps

Seppey CVW, Lara ., Broennimann O., Guisan A., Malard L., Singer D., Yashiro E., Fournier B., 2023/04. Landscape Ecology, 38 (4) pp. 949-965. Peer-reviewed.

[DOI][WoS][serval:BIB_5AE6DE82915F]

Patterns and drivers of beta diversity across geographic scales and lineages in the Macaronesian flora

Mouton Lea, Patiño Jairo, Carine Mark, Rumsey Fred, de Sequeira Miguel Menezes, González-Mancebo Juana María, Gabriel Rosalina Maria de Almeida, Hardy Olivier J., Sim-Sim Manuela, Reyes-Betancort J. Alfredo et al., 2023/02/26. Journal of Biogeography, 50 pp. 858-869. Peer-reviewed.

[DOI][serval:BIB_C1E6FA2F888F]

Developing species distribution models for critically endangered species using participatory data: The European sturgeon marine habitat suitability

Charbonnel Anaïs, Lambert Patrick, Lassalle Géraldine, Quinton Eric, Guisan Antoine, Mas Lise, Paquignon Guillaume, Lecomte Marie, Acolas Marie-Laure, 2023/01. Estuarine, Coastal and Shelf Science, 280 p. 108136. Peer-reviewed.

[DOI][WoS][serval:BIB_348FEC001714]

preview resource BIB_0C77A008BDD2.P001

Too many candidates: Embedded covariate selection procedure for species distribution modelling with the covsel R package

Adde Antoine, Rey Pierre-Louis, Fopp Fabian, Petitpierre Blaise, Schweiger Anna K., Broennimann Olivier, Lehmann Anthony, Zimmermann Niklaus E., Altermatt Florian, Pellissier Loïc et al., 2023. Ecological Informatics, 75 p. 102080. Peer-reviewed.

[URN][DOI][serval:BIB_0C77A008BDD2]

2022

preview resource BIB_D00062E0BD13.P001

What makes a good phorophyte? Predicting occupancy, species richness and abundance of vascular epiphytes in a lowland seasonal tropical forest

Shen Ting, Song Liang, Collart Flavien, Guisan Antoine, Su Yang, Hu Hai-Xia, Wu Yi, Dong Jin-Long, Vanderpoorten Alain, 2022/11/25. Frontiers in Forests and Global Change, 5.

[URN][DOI][serval:BIB_D00062E0BD13]

Transformative Change Needs Direction

Jacobs Sander, Santos-Martín Fernando, Primmer Eeva, Boeraeve Fanny, Morán-Ordóñez Alejandra, Proença Vânia, Schlaepfer Martin, Brotons Lluis, Dunford Robert, Lavorel Sandra et al., 2022/11/10. Sustainability, 14 (22) p. 14844. Peer-reviewed.

[DOI][WoS][serval:BIB_1D467921D1E5]

Protection gaps in Amazon floodplains will increase with climate change: Insight from the world's largest scaled freshwater fish

Dubos Nicolas, Lenormand Maxime, Castello Leandro, Oberdorff Thierry, Guisan Antoine, Luque Sandra, 2022/11. Aquatic Conservation: Marine and Freshwater Ecosystems, 32 (11) pp. 1830-1841. Peer-reviewed.

[DOI][WoS][serval:BIB_2EED677B54C5]

Microclimatic variation in tropical canopies: A glimpse into the processes of community assembly in epiphytic bryophyte communities

Shen Ting, Corlett Richard T., Collart Flavien, Kasprzyk Thibault, Guo Xin-Lei, Patiño Jairo, Su Yang, Hardy Olivier J., Ma Wen-Zhang, Wang Jian et al., 2022/10/22. Journal of Ecology. Peer-reviewed.

[DOI][WoS][serval:BIB_C28108D4BB80]

preview resource BIB_90AFEC901ED3.P001

People's knowledge and perceptions of Trachycarpus fortunei (Chinese windmill palm) invasions and their management in Ticino, Switzerland

Genazzi Micol, Guisan Antoine, Shackleton Ross T., 2022/10/06. Geographica Helvetica, 77 (4) pp. 443-453. Peer-reviewed.

[URN][DOI][serval:BIB_90AFEC901ED3]

Detecting preservation and reintroduction sites for endangered plant species using a two‐step modeling and field approach

Rusconi O., Broennimann O., Storrer Y., Le Bayon RC, Guisan A., Rasmann S., 2022/10. Conservation Science and Practice, 4 (10). Peer-reviewed.

[DOI][WoS][serval:BIB_2861F0E66F70]

preview resource BIB_815FCEBFA3DB.P001

Physicochemical space of synthetic and natural pesticides – a meta-analysis

Dubey Sylvain, Guignard Florian, Gaume Alain, Gindro Katia, Schnee Sylvain, Joz-Roland Mathis, Broennimann Olivier, Dubey Olga, 2022/08/19. PhytoFrontiers™. Peer-reviewed.

[URN][DOI][serval:BIB_815FCEBFA3DB]

preview resource BIB_D70B5C6C4467.P001

Determinants of haemosporidian single- and co-infection risks in western palearctic birds.

Pigeault R., Chevalier M., Cozzarolo C.S., Baur M., Arlettaz M., Cibois A., Keiser A., Guisan A., Christe P., Glaizot O., 2022/08. International journal for parasitology, 52 (9) pp. 617-627. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_D70B5C6C4467]

preview resource BIB_CC8A92708701.P001

Determinants of haemosporidian single- and co-infection risks in western palearctic birds

Pigeault Romain, Chevalier Mathieu, Cozzarolo Camille-Sophie, Baur Molly, Arlettaz Mathilde, Cibois Alice, Keiser André, Guisan Antoine, Christe Philippe, Glaizot Olivier, 2022/08. International Journal for Parasitology, 52 (9) pp. 617-627. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_CC8A92708701]

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Phd thesis

Publications (15)

MODELS, NICHES AND TRAITS: TOWARDS IMPROVED RED LIST ASSESSMENTS

BREINER F. T., 2016., Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_3B8F4FBE73F9]

The role of phylogeny in the spatial distributions and assembly of mountain plant communities.

Ndiribe C., 2013/09. 517, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_7DCA97328A7E]

Predicting spatial patterns of plant biodiversity : from species to communities

Dubuis A., 2013., Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_3E4F8827C7E4]

Using environmental niche modeling to understand biological invasions in a changing world

Petitpierre B., 2013. 317, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_4FFBC3422008]

Predicting the past, present and future of plant biodiversity in Chile : a habitat suitability modeling approach

Pliscoff P., 2013. 252, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_2B54A153F03D]

Species distributions and interactions in a changing world : from understanding to forecasting

Pellissier L., 2012., Université de Lausanne, Faculté de biologie et médecine, Guisan A., Cherix D. (dir.).

[serval:BIB_4C07AD965FA7]

Species distribution models for conservation-oriented studies in Switzerland : filling data and tools gaps

Maggini R., 2011. 235, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_16EF29C539B2]

Evolutionary history and its relevance in understanding and conserving southern African biodiversity

Pio D., 2010. 148, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_5EC20D60D0BD]

Unfolding nature "in silico" : overcoming practical and metodological limitations of species distribution models

Engler R., 2009. 239, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_81BD19FC42D6]

Niche, distribution and global change : modeling insights into biogeography and conservation biology Olivier Broennimann

Broennimann O., 2008. 245, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_B84ED04CB215]

Treeline and climate change : analyzing and modeling patterns and shifts in the Swiss Alps

Gehrig-Fasel J.A., 2007. 132, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_242C1C19349E]

A discrete forest in a continuous landscape : investigating interactions between natural resource management and sustainable development

Mathys L., 2007. 90, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_3832C0AE4532]

Providing more informative projections of climate change impact on plant distribution in a mountain environment

Randin C., 2007. 252, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_DF88CE185D8F]

Changing landscapes of Switzerland: assessing effects of historic and future land uses and land covers on the occurrence of selected butterfly species

Lütolf M., 2006. 126, Université de Lausanne, Faculté de biologie et médecine, Guisan D. (dir.).

[serval:BIB_84239CF155BF]

Modelling tree population dynamics at the alpine and boreal tree-line ecotones in response to climate and land-use change

Rickebusch S., 2006. 126, Université de Lausanne, Faculté de biologie et médecine, Guisan A. (dir.).

[serval:BIB_A00D24B11D80]

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