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Liens UNIL

Faculty of Biology and Medicine

Department of Fundamental Microbiology

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Publications | Masters and Phd thesis

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Publications

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In Press | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | ...

In Press

From microbiome composition to functional engineering, one step at a time.

Burz S.D., Causevic S., Dal Co A., Dmitrijeva M., Engel P., Garrido-Sanz D., Greub G., Hapfelmeier S., Hardt W-D, Hatzimanikatis V. et al. Microbiology and molecular biology reviews. Peer-reviewed.

[DOI][Pmid][serval:BIB_422DE1C48246]

2023

A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont.

Botero J., Sombolestani A.S., Cnockaert M., Peeters C., Borremans W., De Vuyst L., Vereecken N.J., Michez D., Smagghe G., Bonilla-Rosso G. et al., 2023/04/29. Animal microbiome, 5 (1) p. 25. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_63EA6D4A6F50]

Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees.

Sarton-Lohéac G., Nunes da Silva C.G., Mazel F., Baud G., de Bakker V., Das S., El Chazli Y., Ellegaard K., Garcia-Garcera M., Glover N. et al., 2023/04/25. mBio, 14 (2) pp. e0353822. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_43DDCAB27B31]

Integration host factor regulates colonization factors in the bee gut symbiont Frischella perrara.

Schmidt K., Santos-Matos G., Leopold-Messer S., El Chazli Y., Emery O., Steiner T., Piel J., Engel P., 2023/04/14. eLife, 12 pp. e76182. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_04CA444001AB]

2022

The gut microbiota affects the social network of honeybees.

Liberti J., Kay T., Quinn A., Kesner L., Frank E.T., Cabirol A., Richardson T.O., Engel P., Keller L., 2022/10. Nature ecology & evolution, 6 (10) pp. 1471-1479. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_185C1F4D6366]

Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities.

Somerville V., Schowing T., Chabas H., Schmidt R.S., von Ah U., Bruggmann R., Engel P., 2022/08/27. Microbiome, 10 (1) p. 137. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_0B0F961C038E]

Home or hospital birth: the neonatal microbiota perspective.

Stojanov M., Das S., Odent M., Engel P., Baud D., 2022/04. The Lancet. Microbe, 3 (4) pp. e247. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_AA3FDAB82C60]

Mild chronic exposure to pesticides alters physiological markers of honey bee health without perturbing the core gut microbiota.

Almasri H., Liberti J., Brunet J.L., Engel P., Belzunces L.P., 2022/03/11. Scientific reports, 12 (1) p. 4281. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_B19401C23607]

Functional strain redundancy and persistent phage infection in Swiss hard cheese starter cultures.

Somerville V., Berthoud H., Schmidt R.S., Bachmann H.P., Meng Y.H., Fuchsmann P., von Ah U., Engel P., 2022/02. The ISME journal, 16 (2) pp. 388-399. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_DC7315AEE03F]

2021

Impact of Chronic Exposure to Sublethal Doses of Glyphosate on Honey Bee Immunity, Gut Microbiota and Infection by Pathogens.

Castelli L., Balbuena S., Branchiccela B., Zunino P., Liberti J., Engel P., Antúnez K., 2021/04/15. Microorganisms, 9 (4) p. 845. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_0E29F3E9E76D]

A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation.

Das S., Bernasconi E., Koutsokera A., Wurlod D.A., Tripathi V., Bonilla-Rosso G., Aubert J.D., Derkenne M.F., Mercier L., Pattaroni C. et al., 2021/04/09. Nature communications, 12 (1) p. 2126. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_231E626287AA]

Mechanisms underlying gut microbiota-host interactions in insects.

Schmidt K., Engel P., 2021/01/28. The Journal of experimental biology, 224 (Pt 2) pp. jeb207696. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_97B2C6556658]

2020

Suppression of High-Fat Diet-Induced Obesity by Platycodon Grandiflorus in Mice Is Linked to Changes in the Gut Microbiota.

Ke W., Bonilla-Rosso G., Engel P., Wang P., Chen F., Hu X., 2020/09/01. The Journal of nutrition, 150 (9) pp. 2364-2374. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_06F0B1AC3835]

The gut microbiota - brain axis of insects.

Liberti J., Engel P., 2020/06. Current opinion in insect science, 39 pp. 6-13. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_3BEE2B42158E]

Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota.

Bonilla-Rosso G., Steiner T., Wichmann F., Bexkens E., Engel P., 2020/03/31. Proceedings of the National Academy of Sciences of the United States of America, 117 (13) pp. 7355-7362. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_01A113BD45E8]

2019

High dietary fat intake induces a microbiota signature that promotes food allergy.

Hussain M., Bonilla-Rosso G., Kwong Chung CKC, Bäriswyl L., Rodriguez M.P., Kim B.S., Engel P., Noti M., 2019/07. The Journal of allergy and clinical immunology, 144 (1) pp. 157-170.e8. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_FDCCEC65868D]

Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.

Ellegaard K.M., Brochet S., Bonilla-Rosso G., Emery O., Glover N., Hadadi N., Jaron K.S., van der Meer J.R., Robinson-Rechavi M., Sentchilo V. et al., 2019/05. Molecular ecology, 28 (9) pp. 2224-2237. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_37C4AFA6D4D6]

preview resource BIB_DC22A357DABE.P001

Bacterial communities within Phengaris (Maculinea) alcon caterpillars are shifted following transition from solitary living to social parasitism of Myrmica ant colonies.

Szenteczki M.A., Pitteloud C., Casacci L.P., Kešnerová L., Whitaker MRL, Engel P., Vila R., Alvarez N., 2019/04. Ecology and evolution, 9 (8) pp. 4452-4464. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_DC22A357DABE]

preview resource BIB_DD4F991C3500.P001

Genomic diversity landscape of the honey bee gut microbiota.

Ellegaard K.M., Engel P., 2019/01/25. Nature communications, 10 (1) p. 446. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_DD4F991C3500]

2018

preview resource BIB_5052A4E08A8E.P001

Author Correction: Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.

Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/06/19. Nature communications, 9 (1) p. 2440. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_5052A4E08A8E]

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Phd thesis

Publications (7)

Genomic differences in gut microbiota composition between nurses and foragers of the honeybee Apis mellifera

Baud Gilles, 2023/06/26., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_364E28990D8D]

Taxonomic and functional diversity of Swiss cheese starter cultures

Somerville Vincent, 2023/01/10., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_014DCD5701D2]

Multi-Partite Metabolic Interactions in The Honey Bee Gut Microbiota Between The Symbionts Snodgrassella and Gilliamella and Their Host

El Chazli Yassine, 2023., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_3F59D129E8A7]

Genetic determinants underlying the colonization of Frischella perrara in the honey bee gut

Schmidt Konstantin, 2021/01/17., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_158FE1740064]

preview resource BIB_629178A23ED0.P001

Mechanisms underlying the evolution and coexistence of closely related gut bacteria in the honey bee, Apis mellifera

BROCHET Silvia, 2021., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_629178A23ED0]

preview resource BIB_06E4E8E84D5E.P002

Interactions between the gut symbiont Frischella perrara and its host the honey bee (Apis mellifera)

Emery Olivier, 2019/07/16., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_06E4E8E84D5E]

TOWARDS FUNCTIONAL UNDERSTANDING OF THE HONEY BEE GUT MICROBIOTA

KESNEROVA Lucie, 2019., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_04EA9E96A809]

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