Search

Liens UNIL

Faculty of Biology and Medicine

Department of Fundamental Microbiology

Publications

Publications | Masters and Phd thesis

Advanced search is available through Serval

Publications can be managed by accessing Serval via MyUnil

Publications

LOADING...

In Press | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | ...

In Press

From microbiome composition to functional engineering, one step at a time.

Burz S.D., Causevic S., Dal Co A., Dmitrijeva M., Engel P., Garrido-Sanz D., Greub G., Hapfelmeier S., Hardt W-D, Hatzimanikatis V. et al. Microbiology and molecular biology reviews. Peer-reviewed.

[DOI][Pmid][serval:BIB_422DE1C48246]

2023

Microbial interactions in theory and practice: when are measurements compatible with models?

Picot A., Shibasaki S., Meacock O.J., Mitri S., 2023/10. Current opinion in microbiology, 75 p. 102354. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_89918B5E96B2]

A spatially structured mathematical model of the gut microbiome reveals factors that increase community stability.

Shibasaki S., Mitri S., 2023/09/15. iScience, 26 (9) p. 107499. Peer-reviewed.

[DOI][Pmid][serval:BIB_1DE0C547D7D9]

preview resource BIB_B07E342B8378.P001

Breaking down microbial hierarchies.

Sulheim S., Mitri S., 2023/05. Trends in microbiology, 31 (5) pp. 426-427. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_B07E342B8378]

2022

preview resource BIB_A43F9342651F.P001

Microbial invasion of a toxic medium is facilitated by a resident community but inhibited as the community co-evolves.

Piccardi P., Alberti G., Alexander J.M., Mitri S., 2022/12. The ISME journal, 16 (12) pp. 2644-2652. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_A43F9342651F]

Classifying Interactions in a Synthetic Bacterial Community Is Hindered by Inhibitory Growth Medium.

Dos Santos A.R., Di Martino R., Testa SEA, Mitri S., 2022/10/26. mSystems, 7 (5) pp. e0023922. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_91D9BD85F2C5]

Ecological modelling approaches for predicting emergent properties in microbial communities.

van den Berg N.I., Machado D., Santos S., Rocha I., Chacón J., Harcombe W., Mitri S., Patil K.R., 2022/07. Nature ecology & evolution, 6 (7) pp. 855-865. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_9CB7EA70CD91]

2021

Exclusion of the fittest predicts microbial community diversity in fluctuating environments.

Shibasaki S., Mobilia M., Mitri S., 2021/10. Journal of the Royal Society, Interface, 18 (183) p. 20210613. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_31636AF1B4BD]

2020

preview resource BIB_872C291DA30E.P001

Controlling evolutionary dynamics to optimize microbial bioremediation

Shibasaki Shota, Mitri Sara, 2020/07. Evolutionary Applications, 13 (9) pp. 2460-2471. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_872C291DA30E]

2019

preview resource BIB_4DBE2FE67F1B.P001

Toxicity drives facilitation between 4 bacterial species.

Piccardi P., Vessman B., Mitri S., 2019/08/06. Proceedings of the National Academy of Sciences of the United States of America, 116 (32) pp. 15979-15984. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_4DBE2FE67F1B]

preview resource BIB_2EED4F6F5A44.P001

Artificially selecting microbial communities: If we can breed dogs, why not microbiomes?

Arias-Sánchez F.I., Vessman B., Mitri S., 2019/08. PLoS biology, 17 (8) pp. e3000356. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_2EED4F6F5A44]

preview resource BIB_2408248DE884.P001

Bridging the Holistic-Reductionist Divide in Microbial Ecology.

Tecon R., Mitri S., Ciccarese D., Or D., van der Meer J.R., Johnson D.R., 2019. mSystems, 4 (1) pp. e00265-18. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_2408248DE884]

preview resource BIB_54BD1C32D6A7.P001

Spatial structure affects phage efficacy in infecting dual-strain biofilms of Pseudomonas aeruginosa.

Testa S., Berger S., Piccardi P., Oechslin F., Resch G., Mitri S., 2019. Communications biology, 2 p. 405. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_54BD1C32D6A7]

2018

Handling unpredictable ecosystems.

Niehus R., Mitri S., 2018/08. Nature ecology & evolution, 2 (8) pp. 1207-1208. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_0E6F0BF8BA11]

Cooperation, competition and antibiotic resistance in bacterial colonies.

Frost I., Smith WPJ, Mitri S., Millan A.S., Davit Y., Osborne J.M., Pitt-Francis J.M., MacLean R.C., Foster K.R., 2018/06. The ISME journal, 12 (6) pp. 1582-1593. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_B38263557B23]

2017

The evolution of siderophore production as a competitive trait.

Niehus R., Picot A., Oliveira N.M., Mitri S., Foster K.R., 2017/06. Evolution; international journal of organic evolution, 71 (6) pp. 1443-1455. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_C2E7C880090C]

2016

preview resource BIB_B7293A315430.P001

The Evolution of Quorum Sensing as a Mechanism to Infer Kinship.

Schluter J., Schoech A.P., Foster K.R., Mitri S., 2016/03. PLoS computational biology, 12 (4) pp. e1004848. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_B7293A315430]

Pleiotropy and the low cost of individual traits promote cooperation.

Mitri S., Foster K.R., 2016/02. Evolution; international journal of organic evolution, 70 (2) pp. 488-494.

[DOI][Pmid][serval:BIB_B772588E9E8C]

Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element.

Delavat F., Mitri S., Pelet S., van der Meer J.R., 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (24) pp. E3375-E3383. Peer-reviewed.

[DOI][Pmid][serval:BIB_803A374889D3]

The ecology and evolution of microbial competition

Ghoul M., Mitri S., 2016. Trends in Microbiology, 24 (10) pp. 833-845. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_69F365C52571]

LOADING...

Phd thesis

Publications (3)

preview resource BIB_BBAE9A5D70E9.P002

Two design frameworks for optimizing microbial community functions

Shibasaki Shota, 2022/07/26., Université de Lausanne, Faculté de biologie et médecine, Mitri Sara (dir.).

[URN][serval:BIB_BBAE9A5D70E9]

preview resource BIB_104C862F01EA.P001

Ecological dynamics of a synthetic bacterial community growing in a gradient of nutrients and toxicity

DI MARTINO Rita, 2022., Université de Lausanne, Faculté de biologie et médecine, Mitri Sara (dir.).

[URN][serval:BIB_104C862F01EA]

SociaI interactions within a synthetic microbial community

PICCARDI Philippe, 2021., Université de Lausanne, Faculté de biologie et médecine, Mitri Sara (dir.).

[serval:BIB_C847D8E9D758]

Biophore - CH-1015 Lausanne
Switzerland
Tel. +41 21 692 56 00

Contact
Directories

Legal information
Sitemap
Edition