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Liens UNIL

Faculty of Biology and Medicine

Department of Fundamental Microbiology

Publications

Publications | Masters and Phd thesis

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Publications

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2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | ...

2023

preview resource BIB_B07E342B8378.P001

Breaking down microbial hierarchies.

Sulheim S., Mitri S., 2023/05. Trends in microbiology, 31 (5) pp. 426-427. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_B07E342B8378]

2022

preview resource BIB_A43F9342651F.P001

Microbial invasion of a toxic medium is facilitated by a resident community but inhibited as the community co-evolves.

Piccardi P., Alberti G., Alexander J.M., Mitri S., 2022/12. The ISME journal, 16 (12) pp. 2644-2652. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_A43F9342651F]

Classifying Interactions in a Synthetic Bacterial Community Is Hindered by Inhibitory Growth Medium.

Dos Santos A.R., Di Martino R., Testa SEA, Mitri S., 2022/10/26. mSystems, 7 (5) pp. e0023922. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_91D9BD85F2C5]

Ecological modelling approaches for predicting emergent properties in microbial communities.

van den Berg N.I., Machado D., Santos S., Rocha I., Chacón J., Harcombe W., Mitri S., Patil K.R., 2022/07. Nature ecology & evolution, 6 (7) pp. 855-865. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_9CB7EA70CD91]

2021

Exclusion of the fittest predicts microbial community diversity in fluctuating environments.

Shibasaki S., Mobilia M., Mitri S., 2021/10. Journal of the Royal Society, Interface, 18 (183) p. 20210613. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_31636AF1B4BD]

2020

preview resource BIB_872C291DA30E.P001

Controlling evolutionary dynamics to optimize microbial bioremediation

Shibasaki Shota, Mitri Sara, 2020/07. Evolutionary Applications, 13 (9) pp. 2460-2471. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_872C291DA30E]

2019

preview resource BIB_4DBE2FE67F1B.P001

Toxicity drives facilitation between 4 bacterial species.

Piccardi P., Vessman B., Mitri S., 2019/08/06. Proceedings of the National Academy of Sciences of the United States of America, 116 (32) pp. 15979-15984. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_4DBE2FE67F1B]

preview resource BIB_2EED4F6F5A44.P001

Artificially selecting microbial communities: If we can breed dogs, why not microbiomes?

Arias-Sánchez F.I., Vessman B., Mitri S., 2019/08. PLoS biology, 17 (8) pp. e3000356. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_2EED4F6F5A44]

preview resource BIB_2408248DE884.P001

Bridging the Holistic-Reductionist Divide in Microbial Ecology.

Tecon R., Mitri S., Ciccarese D., Or D., van der Meer J.R., Johnson D.R., 2019. mSystems, 4 (1) pp. e00265-18. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_2408248DE884]

preview resource BIB_54BD1C32D6A7.P001

Spatial structure affects phage efficacy in infecting dual-strain biofilms of Pseudomonas aeruginosa.

Testa S., Berger S., Piccardi P., Oechslin F., Resch G., Mitri S., 2019. Communications biology, 2 p. 405. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_54BD1C32D6A7]

2018

Handling unpredictable ecosystems.

Niehus R., Mitri S., 2018/08. Nature ecology & evolution, 2 (8) pp. 1207-1208. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_0E6F0BF8BA11]

Cooperation, competition and antibiotic resistance in bacterial colonies.

Frost I., Smith WPJ, Mitri S., Millan A.S., Davit Y., Osborne J.M., Pitt-Francis J.M., MacLean R.C., Foster K.R., 2018/06. The ISME journal, 12 (6) pp. 1582-1593. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_B38263557B23]

2017

The evolution of siderophore production as a competitive trait.

Niehus R., Picot A., Oliveira N.M., Mitri S., Foster K.R., 2017/06. Evolution; international journal of organic evolution, 71 (6) pp. 1443-1455. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_C2E7C880090C]

2016

preview resource BIB_B7293A315430.P001

The Evolution of Quorum Sensing as a Mechanism to Infer Kinship.

Schluter J., Schoech A.P., Foster K.R., Mitri S., 2016/03. PLoS computational biology, 12 (4) pp. e1004848. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_B7293A315430]

Pleiotropy and the low cost of individual traits promote cooperation.

Mitri S., Foster K.R., 2016/02. Evolution; international journal of organic evolution, 70 (2) pp. 488-494.

[DOI][Pmid][serval:BIB_B772588E9E8C]

Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element.

Delavat F., Mitri S., Pelet S., van der Meer J.R., 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (24) pp. E3375-E3383. Peer-reviewed.

[DOI][Pmid][serval:BIB_803A374889D3]

The ecology and evolution of microbial competition

Ghoul M., Mitri S., 2016. Trends in Microbiology, 24 (10) pp. 833-845. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_69F365C52571]

preview resource BIB_5C82E3AB2084.P001

Resource limitation drives spatial organization in microbial groups.

Mitri S., Clarke E., Foster K.R., 2016. ISME Journal, 10 (6) pp. 1471-1482. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_5C82E3AB2084]

2015

preview resource BIB_9D710535D87B.P001

Migration and horizontal gene transfer divide microbial genomes into multiple niches.

Niehus R., Mitri S., Fletcher A.G., Foster K.R., 2015. Nature Communications, 6 p. 8924. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_9D710535D87B]

2014

Evolving cooperation: From biology to engineering

Hauert S., Mitri S., Keller L., Floreano D., 2014. pp. 203-217 dans Vargas P.A., Di Paolo E.A , Harvey I., Husbands P. (eds.) The horizons of evolutionary robotics, MIT press.

[serval:BIB_B29BCC7A2C36]

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Phd thesis

Publications (3)

preview resource BIB_BBAE9A5D70E9.P002

Two design frameworks for optimizing microbial community functions

Shibasaki Shota, 2022/07/26., Université de Lausanne, Faculté de biologie et médecine, Mitri Sara (dir.).

[URN][serval:BIB_BBAE9A5D70E9]

Ecological dynamics of a synthetic bacterial community growing in a gradient of nutrients and toxicity

DI MARTINO Rita, 2022., Université de Lausanne, Faculté de biologie et médecine, Mitri Sara (dir.).

[URN][serval:BIB_104C862F01EA]

SociaI interactions within a synthetic microbial community

PICCARDI Philippe, 2021., Université de Lausanne, Faculté de biologie et médecine, Mitri Sara (dir.).

[serval:BIB_C847D8E9D758]

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